Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5585
         (375 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_02_0251 - 13478902-13478952,13478989-13479055,13479168-134793...    27   4.8  
04_04_0190 - 23442824-23442846,23442891-23442949,23443613-234437...    27   4.8  

>06_02_0251 -
           13478902-13478952,13478989-13479055,13479168-13479379,
           13480144-13481540,13481574-13482432,13482537-13482836
          Length = 961

 Score = 27.1 bits (57), Expect = 4.8
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = -3

Query: 217 NSRYGSESSPAAIFRLAKLRRSYCNERFSGQLHSVNFVS 101
           N+ Y  E   + I R  KL +  CN++ +   H V  VS
Sbjct: 700 NTSYNEEPEESIIKRKIKLHQEMCNDKDAQTKHKVEGVS 738


>04_04_0190 -
           23442824-23442846,23442891-23442949,23443613-23443737,
           23443767-23443901,23444195-23444301,23444488-23444566,
           23444856-23444942,23445045-23445281,23445783-23446128,
           23446486-23446694
          Length = 468

 Score = 27.1 bits (57), Expect = 4.8
 Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
 Frame = -3

Query: 121 HSVNFVSRCARIVKF-HSQRLKKYNFKKAL 35
           H +N   RC  IVKF H + LK   +K+ L
Sbjct: 293 HVINEALRCGNIVKFVHRKALKDVRYKEYL 322


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,694,083
Number of Sequences: 37544
Number of extensions: 135499
Number of successful extensions: 253
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 253
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 253
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 600754600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)