Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5585
         (375 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z72515-5|CAH60771.2|  331|Caenorhabditis elegans Hypothetical pr...    31   0.20 
AF101305-2|AAF98594.2|  259|Caenorhabditis elegans Uncoordinated...    29   1.1  
AF039047-2|ABR92603.1|  403|Caenorhabditis elegans Serpentine re...    29   1.1  
AF039047-1|AAB94224.2|  403|Caenorhabditis elegans Serpentine re...    29   1.1  

>Z72515-5|CAH60771.2|  331|Caenorhabditis elegans Hypothetical
           protein T11A5.7 protein.
          Length = 331

 Score = 31.5 bits (68), Expect = 0.20
 Identities = 15/45 (33%), Positives = 20/45 (44%)
 Frame = -3

Query: 145 NERFSGQLHSVNFVSRCARIVKFHSQRLKKYNFKKALQMLLNNYR 11
           N R   Q+H   F+  C+  +  HS  L  Y F     M+ N YR
Sbjct: 54  NLRIIAQMHLTGFLLHCSGRIMLHSLDLYNYTFLNPCAMIPNIYR 98


>AF101305-2|AAF98594.2|  259|Caenorhabditis elegans Uncoordinated
           protein 46 protein.
          Length = 259

 Score = 29.1 bits (62), Expect = 1.1
 Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = -3

Query: 226 KFGNSRYGSESSPAAIFRLAKLRRSY-CNERFSGQLHSVNF 107
           KF  S    ES  +++   A L + Y C +R +  LHSVNF
Sbjct: 134 KFAGSSAVFESDNSSVIFSAPLTQKYVCEDRINVTLHSVNF 174


>AF039047-2|ABR92603.1|  403|Caenorhabditis elegans Serpentine
           receptor, class r protein4, isoform b protein.
          Length = 403

 Score = 29.1 bits (62), Expect = 1.1
 Identities = 13/45 (28%), Positives = 23/45 (51%)
 Frame = +2

Query: 155 PT*LGESEYSRR*TFRTVPRITEFIRCQEKGCPIFVFEDVV*SIF 289
           PT + +  Y +R   + V    EF++   K  P+F F  ++ +IF
Sbjct: 236 PTVIADFSYRQRELLKLVNETNEFLQSYAKVAPLFCFFSIINAIF 280


>AF039047-1|AAB94224.2|  403|Caenorhabditis elegans Serpentine
           receptor, class r protein4, isoform a protein.
          Length = 403

 Score = 29.1 bits (62), Expect = 1.1
 Identities = 13/45 (28%), Positives = 23/45 (51%)
 Frame = +2

Query: 155 PT*LGESEYSRR*TFRTVPRITEFIRCQEKGCPIFVFEDVV*SIF 289
           PT + +  Y +R   + V    EF++   K  P+F F  ++ +IF
Sbjct: 236 PTVIADFSYRQRELLKLVNETNEFLQSYAKVAPLFCFFSIINAIF 280


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,645,775
Number of Sequences: 27780
Number of extensions: 127562
Number of successful extensions: 268
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 266
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 268
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 546325158
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)