Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5583
         (458 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006680-4|AAY86275.1|   78|Caenorhabditis elegans Hypothetical ...    27   5.0  
Z92826-6|CAM06583.1|  111|Caenorhabditis elegans Hypothetical pr...    27   6.6  

>AC006680-4|AAY86275.1|   78|Caenorhabditis elegans Hypothetical
           protein R13D7.11 protein.
          Length = 78

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 11/20 (55%), Positives = 11/20 (55%)
 Frame = +3

Query: 396 YGIAAPYGIAGPYTGYGAYG 455
           YG    YG   PY GYG YG
Sbjct: 42  YGHPGMYGGYSPYGGYGGYG 61


>Z92826-6|CAM06583.1|  111|Caenorhabditis elegans Hypothetical
           protein C18D11.9 protein.
          Length = 111

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 12/23 (52%), Positives = 13/23 (56%), Gaps = 2/23 (8%)
 Frame = +3

Query: 393 PY--GIAAPYGIAGPYTGYGAYG 455
           PY  G   PYG  G Y G+G YG
Sbjct: 83  PYYGGYGMPYGGYGEYGGFGGYG 105


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,846,794
Number of Sequences: 27780
Number of extensions: 45015
Number of successful extensions: 227
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 202
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 221
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 820565746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)