Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5581
         (349 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC14C4.07 |||membrane transporter|Schizosaccharomyces pombe|ch...    25   2.5  
SPBC4B4.02c |nca2||mitochondrial protein Nca2 |Schizosaccharomyc...    25   2.5  
SPCC553.06 |||oligosaccharyltransferase subunit|Schizosaccharomy...    25   2.5  
SPAC11H11.01 |sst6|cps23|ESCRT I complex subunit Vps23|Schizosac...    25   3.4  
SPCC584.05 |sec1||SNARE binding protein Sec1|Schizosaccharomyces...    25   4.4  
SPAC18G6.01c |||conserved fungal protein|Schizosaccharomyces pom...    25   4.4  
SPBC1652.01 |||conserved fungal protein|Schizosaccharomyces pomb...    25   4.4  
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr...    24   5.9  
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual    24   7.8  
SPCC1393.05 |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    24   7.8  

>SPAC14C4.07 |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 644

 Score = 25.4 bits (53), Expect = 2.5
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +3

Query: 192 SPVAISKLQHIAAYRWGTLRIPV 260
           SP+ I  L  I A+ WG + IP+
Sbjct: 127 SPLLILPLNFINAFSWGMIEIPL 149


>SPBC4B4.02c |nca2||mitochondrial protein Nca2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 573

 Score = 25.4 bits (53), Expect = 2.5
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +1

Query: 133 YLYMALVGRCRVHLMV 180
           YLY  ++GRC  HL V
Sbjct: 65  YLYWVILGRCSAHLHV 80


>SPCC553.06 |||oligosaccharyltransferase subunit|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 271

 Score = 25.4 bits (53), Expect = 2.5
 Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
 Frame = +1

Query: 163 RVHLMVSRCRLPWPSVNYSTSLHTGGVLSVYLFL-EIHSVLNKLCSRLTS 309
           + HL++S    P  +V Y  S+  GGV S+ L L +I + L +  S LT+
Sbjct: 79  QAHLLLSDTEHPTLAVIYPASVSQGGVASLELRLFDIPTSLLRSDSTLTA 128


>SPAC11H11.01 |sst6|cps23|ESCRT I complex subunit
           Vps23|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 487

 Score = 25.0 bits (52), Expect = 3.4
 Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
 Frame = -3

Query: 296 EHNLLSTECISKNRYTESTPPVCSDVL*FTDGHGRRQRLTIR-WTLQRPTRAIYRYQIVL 120
           +  +L++ CI+   Y  S PP+   +L    G  +   L ++ W  +R    IYR    L
Sbjct: 73  DKTILTSACITVRSYYPSQPPIV-QLLDEKGGKHKYTSLLLQLWKNERSVFNIYRLVQAL 131

Query: 119 LK 114
           +K
Sbjct: 132 IK 133


>SPCC584.05 |sec1||SNARE binding protein Sec1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 693

 Score = 24.6 bits (51), Expect = 4.4
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = -3

Query: 335 LRGCYSFAVEVNREHNLLSTECISKNRYTE 246
           LR CY  + + N++  + ST C S N + +
Sbjct: 557 LRTCYELSDKYNKDIYIGSTVCYSPNEWLD 586


>SPAC18G6.01c |||conserved fungal protein|Schizosaccharomyces
          pombe|chr 1|||Manual
          Length = 259

 Score = 24.6 bits (51), Expect = 4.4
 Identities = 9/20 (45%), Positives = 10/20 (50%)
 Frame = +1

Query: 4  FGTRLMVSGHCRPWTSAMPG 63
          FGTR      C+ W S  PG
Sbjct: 2  FGTRFFAYQFCKNWLSKRPG 21


>SPBC1652.01 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 386

 Score = 24.6 bits (51), Expect = 4.4
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +3

Query: 27  WSLSPMDFSNARGRAKPVPT 86
           +S SP D  N R RAK +P+
Sbjct: 213 FSKSPSDGQNVRSRAKKIPS 232


>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1275

 Score = 24.2 bits (50), Expect = 5.9
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -3

Query: 194 RRQRLTIRWTLQRPTRAIYRYQIVL 120
           R +RL  +  LQRPT+ + RY + L
Sbjct: 599 RCRRLDFQHFLQRPTQRLQRYTLEL 623


>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1828

 Score = 23.8 bits (49), Expect = 7.8
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = -3

Query: 311  VEVNREHNLLSTECISKNRYTESTPPVCSDV 219
            +++N ++  LS E I  N Y  S+  VC +V
Sbjct: 1255 LKINLQNVRLSCEIIFSNAYERSSVCVCREV 1285


>SPCC1393.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 956

 Score = 23.8 bits (49), Expect = 7.8
 Identities = 9/35 (25%), Positives = 19/35 (54%)
 Frame = -3

Query: 338 LLRGCYSFAVEVNREHNLLSTECISKNRYTESTPP 234
           L + C     + ++  NLLS EC+  ++ ++ + P
Sbjct: 520 LRQNCAKLDFDDSKSKNLLSVECLELDKGSDCSTP 554


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,557,540
Number of Sequences: 5004
Number of extensions: 29538
Number of successful extensions: 76
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 76
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 104153322
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)