Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-5581
(349 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0325 + 2275922-2276013,2276467-2276500,2276810-2276932,227... 29 1.3
02_05_0600 - 30273080-30274692,30274709-30274949 28 2.3
11_02_0136 + 8698577-8699400,8699525-8700360,8700520-8701679 27 4.0
10_08_0166 + 15363630-15365633,15366959-15367496,15367577-15367878 27 4.0
04_04_0317 + 24341389-24341504,24341532-24341973 26 7.1
03_01_0331 - 2609012-2609365,2609579-2609920,2610009-2610257,261... 26 7.1
02_05_1298 - 35542250-35542831,35543218-35543410,35543511-355438... 26 9.3
02_05_0920 + 32735552-32735962,32736572-32736805 26 9.3
02_02_0400 + 9836045-9837115,9837474-9838577 26 9.3
01_06_1362 - 36677281-36677574,36677661-36677959,36678435-366785... 26 9.3
>07_01_0325 +
2275922-2276013,2276467-2276500,2276810-2276932,
2277334-2277401,2277494-2277585,2278662-2278987,
2280771-2281142
Length = 368
Score = 28.7 bits (61), Expect = 1.3
Identities = 10/18 (55%), Positives = 15/18 (83%)
Frame = -3
Query: 320 SFAVEVNREHNLLSTECI 267
+FA+E +R HNLLS +C+
Sbjct: 165 AFAIEFDRAHNLLSVDCM 182
>02_05_0600 - 30273080-30274692,30274709-30274949
Length = 617
Score = 27.9 bits (59), Expect = 2.3
Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Frame = +1
Query: 136 LYMALVGRCRVH--LMVSRCRLPWPSVNYSTSLHTGGVLSVYLFLE 267
LY A+VGR R+H + RCRL +P + +L VY+F +
Sbjct: 320 LYAAVVGRLRLHRPACLRRCRLVFPPARLA---FMPPLLGVYVFTD 362
>11_02_0136 + 8698577-8699400,8699525-8700360,8700520-8701679
Length = 939
Score = 27.1 bits (57), Expect = 4.0
Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
Frame = +1
Query: 190 RLPWPSVNYS---TSLHTGGVLSVYLFLEIHSVLNKLCSRLTS 309
+L W VN S T+LH G L+ +L+I+ + +CS + S
Sbjct: 627 KLSWIKVNTSAPSTTLHEMGSLTELRYLDINWCIGDMCSDMKS 669
>10_08_0166 + 15363630-15365633,15366959-15367496,15367577-15367878
Length = 947
Score = 27.1 bits (57), Expect = 4.0
Identities = 12/41 (29%), Positives = 21/41 (51%)
Frame = +3
Query: 189 PSPVAISKLQHIAAYRWGTLRIPVFRNTFCT*QIMFTIDFH 311
PSP A ++ + Y G+ +P T+ T ++ T+D H
Sbjct: 620 PSPAARPSMRQVMQYLDGSAPLPELPPTYVTFNMLATMDTH 660
>04_04_0317 + 24341389-24341504,24341532-24341973
Length = 185
Score = 26.2 bits (55), Expect = 7.1
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = +1
Query: 157 RCRVHLMVSRCRLPW 201
RCR+ V+RC LPW
Sbjct: 98 RCRICNRVARCMLPW 112
>03_01_0331 -
2609012-2609365,2609579-2609920,2610009-2610257,
2610748-2610750
Length = 315
Score = 26.2 bits (55), Expect = 7.1
Identities = 11/23 (47%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
Frame = -1
Query: 70 ALPLALLKS-MGDSDHSPSASCR 5
A+PL +++ +GD HSP A CR
Sbjct: 274 AIPLGRVRAGLGDRHHSPPARCR 296
>02_05_1298 -
35542250-35542831,35543218-35543410,35543511-35543827,
35544144-35544186,35545845-35545900,35546028-35546102,
35546249-35546345,35546422-35546546,35547063-35547167,
35547295-35547432,35547758-35547831,35547995-35548065,
35548168-35548363,35548482-35548572,35549264-35549342,
35549431-35549491,35549745-35549814,35549913-35549987,
35550119-35550194,35550403-35550489,35550744-35550880,
35551000-35551063,35551351-35551415
Length = 958
Score = 25.8 bits (54), Expect = 9.3
Identities = 13/52 (25%), Positives = 26/52 (50%)
Frame = +3
Query: 174 NGESLPSPVAISKLQHIAAYRWGTLRIPVFRNTFCT*QIMFTIDFHGEGITS 329
+ SLP P A+SKL H+ +++ F ++ +++ +D +TS
Sbjct: 483 SASSLPEPSAVSKLPHLKELYLRRMKLHGFPDSLLGLKLLRILDLSQNYLTS 534
>02_05_0920 + 32735552-32735962,32736572-32736805
Length = 214
Score = 25.8 bits (54), Expect = 9.3
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = -3
Query: 191 RQRLTIRWTLQRPTRAIYRYQIVLLKARSSRAILSG 84
RQ++T+ A+YR + + KARS R+ + G
Sbjct: 174 RQKVTMEHHFSHQFYAVYRVRTLRTKARSGRSPVDG 209
>02_02_0400 + 9836045-9837115,9837474-9838577
Length = 724
Score = 25.8 bits (54), Expect = 9.3
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +1
Query: 22 VSGHCRPWTSAMPGAEPSRCLPL 90
V+ C PW SA+P + P+ PL
Sbjct: 384 VAAVCSPWCSAVPPSYPAWITPL 406
>01_06_1362 -
36677281-36677574,36677661-36677959,36678435-36678524,
36678973-36679141,36679247-36679369,36680020-36680046
Length = 333
Score = 25.8 bits (54), Expect = 9.3
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = -3
Query: 203 GHGRRQRLTIRWTLQR 156
G GR QRLT +W L++
Sbjct: 225 GRGRHQRLTTQWALRK 240
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,884,290
Number of Sequences: 37544
Number of extensions: 224099
Number of successful extensions: 628
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 613
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 628
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 506210712
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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