Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5580
         (363 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2F7.07c |||histone deacetylase complex subunit Rco1 |Schizos...    25   2.7  
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb...    25   4.8  
SPCC1919.14c |bdp1||transcription factor TFIIIB complex subunit ...    24   6.3  
SPCC126.09 |||vacuolar membrane zinc transporter |Schizosaccharo...    24   6.3  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    24   6.3  
SPCC777.13 |vps35||retromer complex subunit Vps35|Schizosaccharo...    24   6.3  
SPBC3D6.02 |but2||But2 family protein But2 |Schizosaccharomyces ...    24   8.3  
SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces p...    24   8.3  

>SPAC2F7.07c |||histone deacetylase complex subunit Rco1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 607

 Score = 25.4 bits (53), Expect = 2.7
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = -1

Query: 147 RWKCPPKSDHAIQSY 103
           +WKCP  SDH    Y
Sbjct: 450 KWKCPNHSDHVTPRY 464


>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 2386

 Score = 24.6 bits (51), Expect = 4.8
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = +1

Query: 25   ANRCRVSLRIALYFFFV 75
            +N CR+S++I  YFF V
Sbjct: 1882 SNVCRLSMKIPQYFFLV 1898


>SPCC1919.14c |bdp1||transcription factor TFIIIB complex subunit
           Bdp1 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 507

 Score = 24.2 bits (50), Expect = 6.3
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -2

Query: 167 KNSRLYFDGNVPLSQIT 117
           K   L+FD N+PLSQ++
Sbjct: 125 KELDLFFDENIPLSQLS 141


>SPCC126.09 |||vacuolar membrane zinc transporter
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 418

 Score = 24.2 bits (50), Expect = 6.3
 Identities = 11/22 (50%), Positives = 11/22 (50%)
 Frame = -3

Query: 346 SPSPHSNSAQIPCKCKRLRSIE 281
           SPS   N    P  CKRL S E
Sbjct: 160 SPSTAQNHRSPPASCKRLSSCE 181


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 24.2 bits (50), Expect = 6.3
 Identities = 11/28 (39%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
 Frame = -1

Query: 267  IWFR--CNYCLTLQSFIPLSSLNDALKI 190
            +W +  CNY   L+   PL+S  D LK+
Sbjct: 3309 LWIKSICNYSKVLEKLEPLNSEVDRLKL 3336


>SPCC777.13 |vps35||retromer complex subunit
           Vps35|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 785

 Score = 24.2 bits (50), Expect = 6.3
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = -1

Query: 252 NYCLTLQSFIPLSSLND 202
           +YCL LQ+F+P+ +  D
Sbjct: 399 SYCLELQNFLPVFNAQD 415


>SPBC3D6.02 |but2||But2 family protein But2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 390

 Score = 23.8 bits (49), Expect = 8.3
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -3

Query: 355 LSTSPSPHSNSAQIPCKCKRL 293
           LS+ P P + SA IP K  RL
Sbjct: 207 LSSLPLPRNLSADIPAKSSRL 227


>SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1323

 Score = 23.8 bits (49), Expect = 8.3
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = +1

Query: 1   LRAAYVCFANRCRVSLRIALYFFFVRRNSRQKNPIT 108
           L   +V FANR +    +     F+ R+++  NP+T
Sbjct: 610 LSRGFVAFANRKKSKYNLPGSSGFMTRSTKSTNPMT 645


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,537,056
Number of Sequences: 5004
Number of extensions: 28547
Number of successful extensions: 69
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 69
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 112046990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)