Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5580
         (363 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY180916-3|AAN87268.1|  994|Drosophila melanogaster ORF3 protein.      29   1.4  
S68526-1|AAD14015.2|  624|Drosophila melanogaster pol polyprotei...    29   2.4  
BT024947-1|ABE01177.1|  385|Drosophila melanogaster IP15954p pro...    27   5.6  
AF214021-1|AAF67855.1|  385|Drosophila melanogaster molybdenum c...    27   5.6  
AE014296-1888|AAF50108.2|  385|Drosophila melanogaster CG33048-P...    27   5.6  
AE014296-1887|AAN11896.1|  565|Drosophila melanogaster CG33048-P...    27   5.6  
X04132-4|CAA27750.1| 1237|Drosophila melanogaster protein ( Dros...    27   9.7  
AY928609-2|AAX28841.1| 1000|Drosophila melanogaster RNA-dependen...    27   9.7  
AY095181-1|AAM12274.1|  320|Drosophila melanogaster GM07634p pro...    27   9.7  

>AY180916-3|AAN87268.1|  994|Drosophila melanogaster ORF3 protein.
          Length = 994

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
 Frame = -1

Query: 357 SCPHHPHLIATVHRSHASASDYVR--LSV*SSIW 262
           S  HH   + T+ RSH + ++Y+R  +SV  S W
Sbjct: 813 SSAHHHQTLGTIERSHRTFNEYIRSYISVNKSDW 846


>S68526-1|AAD14015.2|  624|Drosophila melanogaster pol polyprotein
           protein.
          Length = 624

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
 Frame = -1

Query: 357 SCPHHPHLIATVHRSHASASDYVR--LSV*SSIW 262
           S  HH   + T+ RSH + ++YVR  +SV  + W
Sbjct: 442 STAHHHQTLGTIERSHRTFNEYVRSYISVDKTDW 475


>BT024947-1|ABE01177.1|  385|Drosophila melanogaster IP15954p
           protein.
          Length = 385

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 12/43 (27%), Positives = 22/43 (51%)
 Frame = -1

Query: 294 YVRLSV*SSIWFRCNYCLTLQSFIPLSSLNDALKINHVVNLTQ 166
           Y+R+S+      RC+YC+  +  +PL   N  L    ++ L +
Sbjct: 71  YLRISLTERCNLRCDYCMPAEG-VPLQPKNKLLTTEEILRLAR 112


>AF214021-1|AAF67855.1|  385|Drosophila melanogaster molybdenum
           cofactor synthesis-step 1 protein A splice type I
           protein.
          Length = 385

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 12/43 (27%), Positives = 22/43 (51%)
 Frame = -1

Query: 294 YVRLSV*SSIWFRCNYCLTLQSFIPLSSLNDALKINHVVNLTQ 166
           Y+R+S+      RC+YC+  +  +PL   N  L    ++ L +
Sbjct: 71  YLRISLTERCNLRCDYCMPAEG-VPLQPKNKLLTTEEILRLAR 112


>AE014296-1888|AAF50108.2|  385|Drosophila melanogaster CG33048-PA,
           isoform A protein.
          Length = 385

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 12/43 (27%), Positives = 22/43 (51%)
 Frame = -1

Query: 294 YVRLSV*SSIWFRCNYCLTLQSFIPLSSLNDALKINHVVNLTQ 166
           Y+R+S+      RC+YC+  +  +PL   N  L    ++ L +
Sbjct: 71  YLRISLTERCNLRCDYCMPAEG-VPLQPKNKLLTTEEILRLAR 112


>AE014296-1887|AAN11896.1|  565|Drosophila melanogaster CG33048-PC,
           isoform C protein.
          Length = 565

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 12/43 (27%), Positives = 22/43 (51%)
 Frame = -1

Query: 294 YVRLSV*SSIWFRCNYCLTLQSFIPLSSLNDALKINHVVNLTQ 166
           Y+R+S+      RC+YC+  +  +PL   N  L    ++ L +
Sbjct: 71  YLRISLTERCNLRCDYCMPAEG-VPLQPKNKLLTTEEILRLAR 112


>X04132-4|CAA27750.1| 1237|Drosophila melanogaster protein (
            Drosophila retrotransposon412 genome. ).
          Length = 1237

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -1

Query: 357  SCPHHPHLIATVHRSHASASDYVR 286
            S  HH   +  V RSH + ++Y+R
Sbjct: 1055 STAHHHQTVGVVERSHRTLNEYIR 1078


>AY928609-2|AAX28841.1| 1000|Drosophila melanogaster RNA-dependent
           DNA polymerase protein.
          Length = 1000

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -1

Query: 357 SCPHHPHLIATVHRSHASASDYVR 286
           S  HH   +  V RSH + ++Y+R
Sbjct: 818 STAHHHQTVGVVERSHRTLNEYIR 841


>AY095181-1|AAM12274.1|  320|Drosophila melanogaster GM07634p
           protein.
          Length = 320

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -1

Query: 357 SCPHHPHLIATVHRSHASASDYVR 286
           S  HH   +  V RSH + ++Y+R
Sbjct: 206 STAHHHQTVGVVERSHRTLNEYIR 229


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,774,459
Number of Sequences: 53049
Number of extensions: 309794
Number of successful extensions: 772
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 763
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 772
length of database: 24,988,368
effective HSP length: 76
effective length of database: 20,956,644
effective search space used: 922092336
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)