Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5575
         (650 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1739.11c |cdc11||SIN component scaffold protein Cdc11|Schizo...    28   1.0  
SPAC1805.04 |nup132|Nup133b, Nup133b|nucleoporin Nup132|Schizosa...    27   3.1  
SPAC1805.14 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   4.1  
SPBC336.11 |||GARP complex subunit Vps52 |Schizosaccharomyces po...    26   4.1  
SPAPB17E12.03 |||ubiquitin-protein ligase E3 |Schizosaccharomyce...    26   5.4  

>SPCC1739.11c |cdc11||SIN component scaffold protein
           Cdc11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1045

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = -3

Query: 195 IIWKCIKIRNIYNNNNTEYVIISHHIFLLLRLVDELTARL 76
           +I   + IRN+Y +NNT   +   H+FL +R ++    +L
Sbjct: 840 VIQPSLDIRNLYLSNNTFVTLDCKHMFLGVRYLELANVQL 879


>SPAC1805.04 |nup132|Nup133b, Nup133b|nucleoporin
           Nup132|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1162

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = -3

Query: 186 KCIKIRNIYNNNNTEYVIISHHIFLLLRLVDELT 85
           KC  +R ++N  +TE+  +SH + +  R++  LT
Sbjct: 556 KCNSVRYLWNTIDTEFSTVSHSL-IFQRIIYRLT 588


>SPAC1805.14 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 452

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 13/33 (39%), Positives = 15/33 (45%)
 Frame = +1

Query: 349 PLCIVP*TMTR*RNNNLHSKFKTFNVLKQSPTS 447
           P  + P   T  R    HS+    NV  QSPTS
Sbjct: 42  PFTLKPIKSTSDRKRRRHSRMSIVNVWNQSPTS 74


>SPBC336.11 |||GARP complex subunit Vps52 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 508

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +3

Query: 495 FEFHHFTQYNRYCDLVH 545
           F  +HF QY+R+ D VH
Sbjct: 205 FYLYHFEQYSRFLDKVH 221


>SPAPB17E12.03 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 311

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = -3

Query: 309 ISNAHSVRLNFVITYKK*DIYLSFIDHDLRAFVCAIRNIIW 187
           + N HS +L  + T +K  +  S  DH +  F+  I+ I W
Sbjct: 182 VENIHSRKL--ISTREKSSLLTSIADHSMEGFLIIIQLIDW 220


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,623,180
Number of Sequences: 5004
Number of extensions: 52247
Number of successful extensions: 113
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)