Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-5573
(662 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC19C2.10 |||BAR adaptor protein|Schizosaccharomyces pombe|chr... 31 0.20
SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces pombe... 30 0.34
SPAC23C4.05c |||LEA domain protein|Schizosaccharomyces pombe|chr... 27 2.4
SPAC57A10.05c |pof1||F-box protein Pof1|Schizosaccharomyces pomb... 27 2.4
SPBC56F2.12 |ilv5||acetohydroxyacid reductoisomerase|Schizosacch... 26 5.6
SPCC338.16 |pof3||F-box protein Pof3|Schizosaccharomyces pombe|c... 26 5.6
SPAC17G6.02c |||RTA1-like protein|Schizosaccharomyces pombe|chr ... 25 7.4
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ... 25 7.4
SPCC330.12c |sdh3||succinate dehydrogenase |Schizosaccharomyces ... 25 7.4
SPBC56F2.01 |pof12||F-box protein Pof12|Schizosaccharomyces pomb... 25 9.7
>SPBC19C2.10 |||BAR adaptor protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 501
Score = 30.7 bits (66), Expect = 0.20
Identities = 17/58 (29%), Positives = 30/58 (51%)
Frame = -1
Query: 425 MQSGFYATPNRSSISCVPPRATNLCSSAPVSHR*SFKYKRQQLWIQPRDVSSLRLSRG 252
++S +P+ S+IS PP N S+P++ S K R + +P + L+L +G
Sbjct: 388 LKSQCNVSPSPSNISDAPPSKLNRSYSSPLASISSRKVVRMKYSFEPETENELKLKKG 445
>SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 317
Score = 29.9 bits (64), Expect = 0.34
Identities = 22/89 (24%), Positives = 45/89 (50%), Gaps = 1/89 (1%)
Frame = -2
Query: 550 NDSSPGKDATASLKPLLSDNTCNFLTPRLAKDANSTGAGLRRCRAASTPRQTDLRSA-AS 374
+ SS + +S K ++ +F+T ++S+GA + + AST + SA +S
Sbjct: 203 SSSSKSSASPSSSKSSSKFSSSSFITSTTPASSSSSGAIVSNAKTASTDDSSSASSATSS 262
Query: 373 LHARQTCAARPLSRTGSLSNISANNSGYS 287
+ + + A+ LS + S ++ S ++S S
Sbjct: 263 VSSVVSSASSALSASASSASASVSSSASS 291
>SPAC23C4.05c |||LEA domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 431
Score = 27.1 bits (57), Expect = 2.4
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = +3
Query: 93 SVATMSAWTEEMLSWRDERLG-LTELPSTTTRRKHRSAPY 209
SV+ S WTEE L E G L +P ++T+ R P+
Sbjct: 359 SVSKQSTWTEEELKEELESFGELVPVPFSSTKAFERLLPH 398
>SPAC57A10.05c |pof1||F-box protein Pof1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 605
Score = 27.1 bits (57), Expect = 2.4
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = +3
Query: 279 ISRLYPELLALIFERLPVRDRGRAAQVCRAWRDAADRRSVW 401
+S L E+ I L R +AAQV + W++ AD +W
Sbjct: 110 LSLLPVEISFRILSFLDARSLCQAAQVSKHWKELADDDVIW 150
>SPBC56F2.12 |ilv5||acetohydroxyacid
reductoisomerase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 404
Score = 25.8 bits (54), Expect = 5.6
Identities = 13/27 (48%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Frame = +1
Query: 115 GLRKCCPGGTNGLALPSYRA-RRRGEN 192
G R C GG NGL L Y+ R RG +
Sbjct: 265 GERGCLMGGINGLFLAQYQVLRERGHS 291
>SPCC338.16 |pof3||F-box protein Pof3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 577
Score = 25.8 bits (54), Expect = 5.6
Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = +3
Query: 285 RLYP-ELLALIFERLPVRDRGRAAQVCRAWRD 377
R+ P E+L I ++L + + QVC+ WRD
Sbjct: 137 RILPREVLLCILQQLNFKSIVQCMQVCKHWRD 168
>SPAC17G6.02c |||RTA1-like protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 324
Score = 25.4 bits (53), Expect = 7.4
Identities = 18/62 (29%), Positives = 24/62 (38%)
Frame = +3
Query: 216 HRPHLPSAHVSEPPTEPQGTHISRLYPELLALIFERLPVRDRGRAAQVCRAWRDAADRRS 395
H P PS EP P T + + LAL + VR R ++ + W A
Sbjct: 180 HHPIRPSTGRREPDV-PY-TRVRTMSCNCLALATFAMVVRSVYRVIELAQGWEGAVITHE 237
Query: 396 VW 401
VW
Sbjct: 238 VW 239
>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 25.4 bits (53), Expect = 7.4
Identities = 14/45 (31%), Positives = 20/45 (44%)
Frame = +3
Query: 150 LGLTELPSTTTRRKHRSAPYRLHRPHLPSAHVSEPPTEPQGTHIS 284
+G LP+ T+ + R LHR PS P P +H+S
Sbjct: 325 VGSVPLPAPTSSQSLRLGS--LHRSRSPSPRSGRPRRSPSPSHLS 367
>SPCC330.12c |sdh3||succinate dehydrogenase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 180
Score = 25.4 bits (53), Expect = 7.4
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = +3
Query: 174 TTTRRKHRSAPYRLHRPHLPSAHVSEP 254
T T R A R+HRP+ P + EP
Sbjct: 43 TQTEANSRLASQRVHRPNSPHLTIYEP 69
>SPBC56F2.01 |pof12||F-box protein Pof12|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 440
Score = 25.0 bits (52), Expect = 9.7
Identities = 15/50 (30%), Positives = 19/50 (38%), Gaps = 4/50 (8%)
Frame = +3
Query: 297 ELLALIFERLPVRDRGRAAQVCRAWRDAADRRSVWRGVE----AALHLRR 434
E L + L D +V R+W R SVW + HLRR
Sbjct: 17 ETLLHVLNDLSAHDLAALERVSRSWNSIVRRSSVWHNLYLSEFGTKHLRR 66
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,657,700
Number of Sequences: 5004
Number of extensions: 53746
Number of successful extensions: 156
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -