Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5569
         (542 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19A8.05c |vps27|sst4|sorting receptor for ubiquitinated memb...    26   3.1  
SPAC17A5.12 |ucp7||UBA/TPR/DNAJ domain protein Ucp7|Schizosaccha...    26   4.1  
SPBC21C3.14c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    25   7.2  
SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated prote...    25   9.5  
SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2 |Schiz...    25   9.5  
SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regula...    25   9.5  

>SPAC19A8.05c |vps27|sst4|sorting receptor for ubiquitinated
           membrane proteins, ESCRT 0 complex|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 610

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = -1

Query: 263 PASCAFLIATSIQKFPTVALKASQPSTRAVAADSFNITGFA 141
           P+  A  ++T I+  P     +  PST    AD+ NIT +A
Sbjct: 341 PSVPAHTVSTDIRSSPFSGRPSDNPSTLISTADADNITLYA 381


>SPAC17A5.12 |ucp7||UBA/TPR/DNAJ domain protein
           Ucp7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 697

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 12/20 (60%), Positives = 15/20 (75%), Gaps = 2/20 (10%)
 Frame = +3

Query: 108 KRYPVKSNRSLC--KAGDIE 161
           KR P+ SNRSLC  K GD++
Sbjct: 448 KRVPLLSNRSLCYQKVGDLK 467


>SPBC21C3.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 841

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +1

Query: 88  QHWEFYINDILSKATDPCAK 147
           +HWE    D+L KATD C K
Sbjct: 343 EHWE----DLLRKATDSCQK 358


>SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated protein
            Mug36|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1646

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +1

Query: 58   TVGHYSHGT*QHWEFYINDILS 123
            +VG + HG  +  E Y+ND LS
Sbjct: 1493 SVGSFRHGIIKFTEKYVNDFLS 1514


>SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 527

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 10/45 (22%), Positives = 24/45 (53%)
 Frame = +1

Query: 52  ADTVGHYSHGT*QHWEFYINDILSKATDPCAKPVILKESAATALV 186
           A ++GH ++        +   I S +T P   P+I+ +S +++++
Sbjct: 256 ASSLGHRTNNNQNQLIRFSTQIRSSSTSPPRSPLIISDSPSSSII 300


>SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regulator
            protein Rif1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1400

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = -3

Query: 522  CGLVFQLLPKATAVVVKSXTKLSPFLAGAAKAM 424
            C L+ QLL  +TA        LSP L    K++
Sbjct: 956  CILILQLLLNSTATASNILESLSPLLTSGLKSI 988


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,213,068
Number of Sequences: 5004
Number of extensions: 42873
Number of successful extensions: 85
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 223909422
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)