Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5569
         (542 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0376 - 3320621-3321151                                           31   0.79 
05_07_0200 - 28368890-28369021,28369169-28369303,28369918-283699...    29   1.8  
02_03_0121 + 15468894-15468906,15469008-15469193,15474157-154746...    28   5.5  
08_02_1009 - 23527880-23527884,23528437-23528728                       27   7.3  
12_02_0711 + 22404710-22404824,22405726-22406288,22406386-224065...    27   9.7  
12_01_0951 - 9471391-9471597,9471857-9471966,9473173-9473278,947...    27   9.7  
09_01_0019 + 403078-404211                                             27   9.7  

>08_01_0376 - 3320621-3321151
          Length = 176

 Score = 30.7 bits (66), Expect = 0.79
 Identities = 20/57 (35%), Positives = 24/57 (42%), Gaps = 4/57 (7%)
 Frame = -1

Query: 338 CFSAFNAQYPAIPXXXXXLAPTHPTPASCAFLIATSIQKF----PTVALKASQPSTR 180
           C SA     P +P      AP  P PAS A L A  +  F       A+KA  P+ R
Sbjct: 33  CLSALGLAAPPLPDEHPAYAPPPPPPASMAALPADLVWAFQPAPEPAAIKARLPAVR 89


>05_07_0200 -
           28368890-28369021,28369169-28369303,28369918-28369947,
           28370019-28370093,28370222-28370333,28370440-28370621,
           28370723-28370854,28372193-28373479
          Length = 694

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 17/48 (35%), Positives = 22/48 (45%)
 Frame = -2

Query: 187 PPERSQPTLSISPALHKDLLLLTGYRLYRIPNAVKSRDCNVRLYQHGL 44
           P E  Q T  +S   HKD   +  Y+ Y   N  K+  CNV + Q  L
Sbjct: 559 PWEWMQDTGIVSQNTHKDAKNINTYKTYTRDNNKKNLGCNVHVCQGAL 606


>02_03_0121 +
           15468894-15468906,15469008-15469193,15474157-15474650,
           15475090-15475521,15475597-15475821,15476065-15476346,
           15476432-15476704,15477680-15477805,15481010-15481288,
           15481313-15481588,15481670-15482113,15482200-15482397,
           15482574-15482732,15482832-15483085,15483164-15483316,
           15483395-15483683,15483769-15483807,15483913-15483951
          Length = 1386

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 16/51 (31%), Positives = 24/51 (47%)
 Frame = -1

Query: 278 PTHPTPASCAFLIATSIQKFPTVALKASQPSTRAVAADSFNITGFAQGSVA 126
           PT PT AS     A+  Q   T    +++P   A+ A +   + FA  S+A
Sbjct: 114 PTEPTAASTEHATASPAQPPLTPVTPSTEPGAAAIEAAAAANSSFADSSLA 164


>08_02_1009 - 23527880-23527884,23528437-23528728
          Length = 98

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +1

Query: 244 RKAQEAGVGWVGARRSNHYGMAGYWALKAEKQG 342
           R     G G +GARRS  +   G W +KA ++G
Sbjct: 47  RDVAGGGGGDLGARRSCRWVWRGLWRMKAGRRG 79


>12_02_0711 +
           22404710-22404824,22405726-22406288,22406386-22406547,
           22406664-22407257
          Length = 477

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 17/41 (41%), Positives = 23/41 (56%)
 Frame = +3

Query: 213 CRKLLYGCRDKEGAGSGSRMGGCQT*QSLRYGWILGIESGK 335
           CR+L +GC D  GA + S +G   T  ++  G I GI  GK
Sbjct: 54  CRRLYHGCSD--GAAACSVVGERVTVLTIDGGGIRGIIPGK 92


>12_01_0951 -
           9471391-9471597,9471857-9471966,9473173-9473278,
           9474719-9475060,9475598-9475647,9476745-9477717
          Length = 595

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
 Frame = +1

Query: 148 PVILKESAATALVDGCDALSATVGNFCMDVAIRKAQEAGV-GWVGARRSNHYGMAG 312
           P I+ E     +V GC+ +++ +GN   +V I  +    +  W GA    H G  G
Sbjct: 133 PYIVSEEHNQLVVTGCNIMASLLGNSGSNVIIGCSSFCSITDWWGADPIVHSGAGG 188


>09_01_0019 + 403078-404211
          Length = 377

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 18/54 (33%), Positives = 24/54 (44%)
 Frame = -1

Query: 272 HPTPASCAFLIATSIQKFPTVALKASQPSTRAVAADSFNITGFAQGSVAFDRIS 111
           H  P+S     A +       A  AS PS+ + AA S N     QG +A  RI+
Sbjct: 44  HQPPSSSVSANAAAANAAAASAPSASAPSSSSAAASSDNAYTSFQGLLALARIT 97


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,057,892
Number of Sequences: 37544
Number of extensions: 314344
Number of successful extensions: 850
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 839
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 850
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1210221432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)