Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-5568
(635 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1514 + 34114626-34114637,34114766-34114841,34115022-34115347 30 1.8
02_04_0275 - 21469391-21470650 30 1.8
11_01_0154 + 1281434-1281725,1281923-1281987,1282112-1282175,128... 29 4.1
06_03_0079 - 16301056-16301611,16301745-16301906,16306776-163071... 29 4.1
06_01_0778 + 5816588-5816885,5817554-5817615,5818764-5818905,581... 29 4.1
03_02_0163 - 6056959-6058989 29 4.1
04_03_0286 + 13915705-13915984,13916478-13917062,13918188-139186... 28 5.4
01_05_0647 + 23910318-23910694,23911732-23911867,23912067-239122... 28 5.4
06_03_1097 - 27570037-27570262,27570575-27570730,27570763-275708... 28 7.1
03_05_0576 + 25765137-25766420 28 7.1
07_03_0305 - 16475127-16476017,16476058-16478067 27 9.4
>04_04_1514 + 34114626-34114637,34114766-34114841,34115022-34115347
Length = 137
Score = 29.9 bits (64), Expect = 1.8
Identities = 16/27 (59%), Positives = 17/27 (62%)
Frame = +3
Query: 36 ASLAVVAFAKEEKGTPKAVEEKKQDKR 116
ASL V AKEEK K EEKK DK+
Sbjct: 65 ASLLSVGPAKEEKKEEKKPEEKKDDKK 91
>02_04_0275 - 21469391-21470650
Length = 419
Score = 29.9 bits (64), Expect = 1.8
Identities = 11/42 (26%), Positives = 27/42 (64%)
Frame = +1
Query: 412 SRNTSPIPSRRKYPMR*KCPYLSPTPLKRKFPLPSRNTSNTQ 537
+R+T+P+ R +P R + +L + +KR+ P P + +++++
Sbjct: 183 ARSTAPMAPRVNFPQRTRTQFLPSSGVKRRMPSPPQVSASSE 224
>11_01_0154 +
1281434-1281725,1281923-1281987,1282112-1282175,
1282303-1282449,1282583-1282677,1284358-1284465
Length = 256
Score = 28.7 bits (61), Expect = 4.1
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = -3
Query: 102 SSLRLPSVCLSPPWQRQPRPTMPPK*PCTS 13
+++ PS+ S P R+P +PP PC+S
Sbjct: 3 AAVATPSLLFSSPTPRRPSSCLPPPPPCSS 32
>06_03_0079 -
16301056-16301611,16301745-16301906,16306776-16307134,
16307372-16307884
Length = 529
Score = 28.7 bits (61), Expect = 4.1
Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
Frame = +2
Query: 20 HGYFGGIVGRGCL--CQGGERHTEGSRREETRQKG 118
HGY GG GRG GG + E + R E R +G
Sbjct: 335 HGYTGGADGRGQYRGSDGGRKDGEATPRREIRVRG 369
>06_01_0778 +
5816588-5816885,5817554-5817615,5818764-5818905,
5819969-5820064,5820147-5820266,5820401-5820663,
5821507-5821617
Length = 363
Score = 28.7 bits (61), Expect = 4.1
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = -3
Query: 393 PSLPPQQF*CARGVHDDRGGSRLRWQL 313
P LPP+ C VH D GG+ +RW L
Sbjct: 247 PPLPPE---CNAQVHTDYGGAAVRWGL 270
>03_02_0163 - 6056959-6058989
Length = 676
Score = 28.7 bits (61), Expect = 4.1
Identities = 17/64 (26%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Frame = +1
Query: 367 SKLLRW*RRCL-FRIQSRNTSPIPSRRKYPMR*KCPYLSPTPLKRKFPLPSRNTSNTQYT 543
S LL W R + Q +N SP P+ + ++ P P P P R+++ ++Y
Sbjct: 5 SSLLSWPHRAISLSFQPKNPSPSPATARVSVQDP-----PPPPSDANPSPGRSSNTSRYV 59
Query: 544 YLSP 555
+++P
Sbjct: 60 WVNP 63
>04_03_0286 +
13915705-13915984,13916478-13917062,13918188-13918661,
13918963-13920208,13920282-13920297
Length = 866
Score = 28.3 bits (60), Expect = 5.4
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = +2
Query: 23 GYFGGIVGRGCLCQGG 70
GYF I+G CLC GG
Sbjct: 258 GYFAPILGYNCLCDGG 273
>01_05_0647 +
23910318-23910694,23911732-23911867,23912067-23912277,
23912357-23912724,23913793-23914081,23914173-23914372,
23914452-23914646
Length = 591
Score = 28.3 bits (60), Expect = 5.4
Identities = 12/42 (28%), Positives = 21/42 (50%)
Frame = +1
Query: 391 RCLFRIQSRNTSPIPSRRKYPMR*KCPYLSPTPLKRKFPLPS 516
+CL + + P+P R +P + P PTP+ +P P+
Sbjct: 37 KCLMCVCDVDPHPLPPSRHHPPPPEEPEPEPTPVNHHYPPPT 78
>06_03_1097 -
27570037-27570262,27570575-27570730,27570763-27570881,
27572154-27572236,27574991-27575041,27575218-27575674,
27576139-27576228,27576672-27576701
Length = 403
Score = 27.9 bits (59), Expect = 7.1
Identities = 14/32 (43%), Positives = 16/32 (50%)
Frame = -3
Query: 132 LCHRCPFCLVSSLRLPSVCLSPPWQRQPRPTM 37
L HR P L S R + S WQ+QPR M
Sbjct: 301 LVHRLPQALRFSNRFSCILSSARWQQQPRDGM 332
>03_05_0576 + 25765137-25766420
Length = 427
Score = 27.9 bits (59), Expect = 7.1
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = -3
Query: 84 SVCLSPPWQRQPRPTMPP 31
+V +SPP Q +PRP +PP
Sbjct: 98 AVSVSPPTQPRPRPELPP 115
>07_03_0305 - 16475127-16476017,16476058-16478067
Length = 966
Score = 27.5 bits (58), Expect = 9.4
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = -3
Query: 72 SPPWQRQPRPTMPPK*PC 19
SPP Q P P +PP PC
Sbjct: 26 SPPPQTAPAPALPPSNPC 43
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,863,258
Number of Sequences: 37544
Number of extensions: 267979
Number of successful extensions: 880
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 847
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 879
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1561213104
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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