Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5568
         (635 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81086-6|CAB03116.1|  610|Caenorhabditis elegans Hypothetical pr...    28   6.4  
Z75531-12|CAA99806.4|  348|Caenorhabditis elegans Hypothetical p...    28   6.4  
AC024877-2|AAF60905.2|  608|Caenorhabditis elegans Hypothetical ...    27   8.5  

>Z81086-6|CAB03116.1|  610|Caenorhabditis elegans Hypothetical
           protein F53B6.6 protein.
          Length = 610

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 16/53 (30%), Positives = 28/53 (52%)
 Frame = -1

Query: 179 AVAFIATSEIMSSIRSYVIDAPFVLFLLFDCLRCAFLLLGKGNHGQRCHQNNR 21
           +++F ++SE+  S  S VI +  +L  LF C+   FL+  + N     H + R
Sbjct: 553 SLSFQSSSEVCLSKTSTVIFSTAILLALFCCVTVKFLVTRQRNRQLLHHASKR 605


>Z75531-12|CAA99806.4|  348|Caenorhabditis elegans Hypothetical
           protein C54D10.6 protein.
          Length = 348

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 11/39 (28%), Positives = 21/39 (53%)
 Frame = -1

Query: 176 VAFIATSEIMSSIRSYVIDAPFVLFLLFDCLRCAFLLLG 60
           +  IAT  ++S+I + ++  P+ +F    C RC  +  G
Sbjct: 283 LCLIATHGLLSTITTIMVHKPYRVFFFILCRRCLLMPAG 321


>AC024877-2|AAF60905.2|  608|Caenorhabditis elegans Hypothetical
           protein Y95B8A.7 protein.
          Length = 608

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
 Frame = +1

Query: 403 RIQSRNTSPIPSRRKYPMR*KCPYLSP-TPLKRKFPLPSRNTSNTQYTYLSP 555
           R Q +  + +P+  + P   K P+ +P  P  R+F +    T N +Y  L+P
Sbjct: 221 RSQEKRKNQLPAVHEPPSFMKTPWFAPPAPEGREFNIVDDRTINEKYAGLNP 272


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,488,358
Number of Sequences: 27780
Number of extensions: 207027
Number of successful extensions: 702
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 662
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 700
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1406256614
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)