Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5566
         (717 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0276 - 20309224-20309910                                         29   2.8  
11_03_0011 + 8934346-8934398,8936014-8936198,8936334-8936425,893...    29   3.7  
02_02_0411 - 9928175-9928187,9928385-9928575,9929044-9929126,992...    29   3.7  
06_03_1016 - 26916978-26917244,26917499-26917642,26917708-269177...    28   8.5  

>01_05_0276 - 20309224-20309910
          Length = 228

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 30/111 (27%), Positives = 50/111 (45%), Gaps = 1/111 (0%)
 Frame = -3

Query: 397 QLGLAPSTNGMSQSGDRRRAGRSPAWRLRDVTLEGR*RHYDVQKQHDLDPVGNERADRGW 218
           +LG A +T+    SG+R +  R P       T      H   Q + D+D +  +  + G 
Sbjct: 5   KLGDAAATSAAGNSGERPQPEREP-------TKPPPPEHEAAQPE-DVDEIFRKMKETG- 55

Query: 217 VVLNKIFIKASP***CEVGLIQECA-FSGIVRHKVCVVQRAVYTKQGVAFC 68
           ++ N + +       C+ GL+QE     G++R K  + +  VYT    AFC
Sbjct: 56  LIPNAVAMLDGL---CKSGLVQEAMKLFGLMREKGSIPEVVVYTAVVEAFC 103


>11_03_0011 +
           8934346-8934398,8936014-8936198,8936334-8936425,
           8937699-8937768,8937856-8937971,8939050-8939146,
           8939965-8940044,8940198-8940392,8940548-8940631,
           8940709-8940769,8941530-8941590,8942023-8942116,
           8942188-8942260,8942573-8942655,8943241-8943431,
           8943563-8943572
          Length = 514

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 16/45 (35%), Positives = 19/45 (42%)
 Frame = +3

Query: 132 IPLKAHS*IKPTSHYYYGEAFMKILFRTTQPRSALSFPTGSRSCC 266
           +P K    I PT   Y G  F K L   +  RS  S     R+CC
Sbjct: 333 LPFKEKQVITPTGSVYTGVEFSKRLCGISVIRSGESMENALRACC 377


>02_02_0411 -
           9928175-9928187,9928385-9928575,9929044-9929126,
           9929444-9929516,9929588-9929681,9930100-9930160,
           9930824-9930884,9930963-9931046,9931196-9931390,
           9931526-9931605,9932595-9932691,9934198-9934313,
           9934407-9934476,9935439-9935530,9935661-9935823
          Length = 490

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 16/45 (35%), Positives = 19/45 (42%)
 Frame = +3

Query: 132 IPLKAHS*IKPTSHYYYGEAFMKILFRTTQPRSALSFPTGSRSCC 266
           +P K    I PT   Y G  F K L   +  RS  S     R+CC
Sbjct: 308 LPFKEKQVITPTGSVYTGVEFSKRLCGISVIRSGESMENALRACC 352


>06_03_1016 -
           26916978-26917244,26917499-26917642,26917708-26917783,
           26917875-26918010,26918332-26918473,26920020-26920035,
           26920222-26920574
          Length = 377

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 22/85 (25%), Positives = 38/85 (44%), Gaps = 2/85 (2%)
 Frame = -3

Query: 487 VAKTPINIFRVKYSIVTNIQNRYVQGDTGAQLGLAP--STNGMSQSGDRRRAGRSPAWRL 314
           + K+ +   RVK  +  ++  R        QLGLAP  S+  M Q+ D     R+ A   
Sbjct: 278 ILKSDVEALRVKVKMAEDMVARAAMSCGLGQLGLAPLLSSRKMCQALDMLSLPRNDACGF 337

Query: 313 RDVTLEGR*RHYDVQKQHDLDPVGN 239
           + + L  + ++  VQ    L+ + N
Sbjct: 338 KGLNLGRQVQNSPVQSAASLESLDN 362


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,610,954
Number of Sequences: 37544
Number of extensions: 382480
Number of successful extensions: 950
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 928
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 949
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1862792824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)