Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5561
         (430 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1222 - 28521799-28521900,28521952-28522029,28522292-285243...    28   3.7  
06_03_1214 + 28469848-28473048                                         27   8.5  

>06_03_1222 -
           28521799-28521900,28521952-28522029,28522292-28524335,
           28525188-28525303
          Length = 779

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 22/77 (28%), Positives = 33/77 (42%), Gaps = 1/77 (1%)
 Frame = -1

Query: 292 LTSYKFGNSRYGSESSPAAIFSLAKLRR-SYCNERFSGQFHSVNYVSRCARIVKFHLINF 116
           L   +  N+    E  P+A+ +   LR  S  N +F G    VN+     RI  F + NF
Sbjct: 309 LEELRLDNNNMSGEL-PSAVGNCTNLRYLSLRNNKFVGDLSKVNFTRLNLRIADFSINNF 367

Query: 115 S*RA*RSITSKISFLIL 65
           +     SI S  + + L
Sbjct: 368 TGTVPESIYSCSNLIAL 384


>06_03_1214 + 28469848-28473048
          Length = 1066

 Score = 26.6 bits (56), Expect = 8.5
 Identities = 22/77 (28%), Positives = 33/77 (42%), Gaps = 1/77 (1%)
 Frame = -1

Query: 292 LTSYKFGNSRYGSESSPAAIFSLAKLRR-SYCNERFSGQFHSVNYVSRCARIVKFHLINF 116
           L   +  N+    E  P+A+ +   LR  S  N +F G    VN+     RI  F + NF
Sbjct: 312 LEELRLDNNNMSGEL-PSALGNCTNLRYLSLRNNKFVGDLSKVNFTWLNLRIADFSINNF 370

Query: 115 S*RA*RSITSKISFLIL 65
           +     SI S  + + L
Sbjct: 371 TGTVPESIFSCSNLIAL 387


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,597,190
Number of Sequences: 37544
Number of extensions: 146895
Number of successful extensions: 252
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 251
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 252
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 802495716
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)