Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5561
         (430 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z30423-1|CAA83003.1| 1681|Caenorhabditis elegans Hypothetical pr...    29   1.9  
AF101305-2|AAF98594.2|  259|Caenorhabditis elegans Uncoordinated...    27   7.5  

>Z30423-1|CAA83003.1| 1681|Caenorhabditis elegans Hypothetical
           protein T20G5.1 protein.
          Length = 1681

 Score = 28.7 bits (61), Expect = 1.9
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = +3

Query: 204 YDRRNLARLNIAAGELSEPYRELPNLYDVKKSVVQYACLR 323
           YDR  + +L   AG L        +LYD+K++VV    L+
Sbjct: 610 YDRAAIGQLCEKAGLLQRALEHFTDLYDIKRTVVHTHLLK 649


>AF101305-2|AAF98594.2|  259|Caenorhabditis elegans Uncoordinated
           protein 46 protein.
          Length = 259

 Score = 26.6 bits (56), Expect = 7.5
 Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = -1

Query: 280 KFGNSRYGSESSPAAIFSLAKLRRSY-CNERFSGQFHSVNY 161
           KF  S    ES  +++   A L + Y C +R +   HSVN+
Sbjct: 134 KFAGSSAVFESDNSSVIFSAPLTQKYVCEDRINVTLHSVNF 174


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,586,563
Number of Sequences: 27780
Number of extensions: 143497
Number of successful extensions: 264
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 252
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 264
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 713998766
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)