Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5559
         (667 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC11E3.07 |vma4||V-type ATPase subunit E|Schizosaccharomyces p...    75   1e-14
SPAC637.06 |||alpha-1,2-galactosyltransferase |Schizosaccharomyc...    29   0.46 
SPBC3B9.09 |vps36||RBZ zinc finger protein Vps36|Schizosaccharom...    28   1.1  
SPBC215.10 |||haloacid dehalogenase-like hydrolase|Schizosacchar...    27   2.4  
SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||M...    27   2.4  
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    26   5.6  
SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr...    25   9.8  
SPAC17C9.11c |||zinc finger protein, zf-C2H2 type/UBA domain pro...    25   9.8  

>SPAC11E3.07 |vma4||V-type ATPase subunit E|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 227

 Score = 74.5 bits (175), Expect = 1e-14
 Identities = 47/175 (26%), Positives = 83/175 (47%), Gaps = 1/175 (0%)
 Frame = +1

Query: 127 MMAFIEQXXXXXXXXXXXXXXXXFNIEKGRLVQQQRLKIMXXXXXXXXXXXXXXXIQSSN 306
           M++FI+Q                F +EK ++V++Q   I                I  SN
Sbjct: 15  MVSFIKQEALEKAKEIHTLSEEEFQVEKAKIVREQCDAIDQTYDMKLKRASMAQKIAKSN 74

Query: 307 MLNQARLKVLKVREDHVRNVLDEARKRLAEVPKDTKLYSELLVTLIVQALFQLMEPTVTI 486
           +LN++RL++L  ++  + ++     K+L  + +    Y++ +  LIVQA+  L EP   +
Sbjct: 75  VLNKSRLEILNSKQKVIDDIFSRVEKKLDGIEQKKDAYTKFMADLIVQAMELLGEPVGIV 134

Query: 487 RVRQTDKALVESLLGKAQTDYKNKIKK-DVVLKVDTENFLSPDTCGGIELVAARG 648
             RQ D  +V++ + KA    K+K    D  L  +T++FL+    GG+ LV   G
Sbjct: 135 YSRQRDAEIVKAAIPKATEVLKSKNGSIDYELDAETDDFLNDSVLGGVVLVGLGG 189


>SPAC637.06 |||alpha-1,2-galactosyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 347

 Score = 29.5 bits (63), Expect = 0.46
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = -2

Query: 651 RPPGCNQLDSPTGVGRQKVFGVDFQHNILLDLILVVCLGF 532
           +P   N LDS  G  R+K F     H + + ++L++C G+
Sbjct: 21  KPGTSNVLDSKEGDTRRKYFTKTHLHRLFVFVVLLLCSGY 60


>SPBC3B9.09 |vps36||RBZ zinc finger protein
           Vps36|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 467

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = -1

Query: 592 RCRLSTQHPS*SYSCSLFGLFRAGTPPEPCR 500
           + RLS +H   S++C +      G P  PCR
Sbjct: 87  KIRLSLRHVEKSWACKICTFINVGDPINPCR 117


>SPBC215.10 |||haloacid dehalogenase-like
           hydrolase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 302

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 15/42 (35%), Positives = 24/42 (57%)
 Frame = +1

Query: 349 DHVRNVLDEARKRLAEVPKDTKLYSELLVTLIVQALFQLMEP 474
           D   N L+EA+KRLA +P D     E+ +T  +   F+++ P
Sbjct: 181 DDDTNGLEEAKKRLAGIPSD-----EVALTQALPQTFEIIPP 217


>SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1052

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 28/93 (30%), Positives = 40/93 (43%), Gaps = 9/93 (9%)
 Frame = +1

Query: 367  LDEARKRLAEVPKDTK-LYSELLVTLIVQALFQL---MEPTVTIRVR-----QTDKALVE 519
            ++EA K      KD K L   +L T+ +     +   +E T+TI V        DK   E
Sbjct: 745  VEEAEKDYQPSEKDDKSLIGGILSTVEMTQSTDVNDEIENTLTIPVEVEHSDNIDKGSEE 804

Query: 520  SLLGKAQTDYKNKIKKDVVLKVDTENFLSPDTC 618
            + LGK   D  N  + DV+  V  E   + D C
Sbjct: 805  NDLGKEAVDEANNNQNDVLESVVVEQSTTTDDC 837


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1841

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 17/49 (34%), Positives = 25/49 (51%)
 Frame = -2

Query: 552 LVVCLGFSEQGLHQSLVGLTDADGDSGFHELEESLHNKCDQQL*VQFGV 406
           L+V     EQG    ++   D+  +SG HE+ + L N  DQQL  Q  +
Sbjct: 492 LIVACEELEQGFDLDIL---DSLRESGIHEVIQLLRNFPDQQLEKQLNI 537


>SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 780

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -3

Query: 89  RHGCCLFLTPLTRKTADIE 33
           RHGCC+    L R   DI+
Sbjct: 619 RHGCCILQRCLDRTNGDIQ 637


>SPAC17C9.11c |||zinc finger protein, zf-C2H2 type/UBA domain
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 240

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 14/37 (37%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
 Frame = +1

Query: 307 MLNQARLKVL-KVREDHVRNVLDEARKRLAEVPKDTK 414
           M +QARL+ L K+R+    +  ++ +K LAE+ +D K
Sbjct: 92  MQDQARLRDLQKIRQQKAEDA-EQRKKILAEIERDKK 127


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,532,507
Number of Sequences: 5004
Number of extensions: 46705
Number of successful extensions: 141
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 303841898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)