Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5559
         (667 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0134 + 26805329-26805430,26807130-26807230,26807876-268080...    83   2e-16
05_05_0231 + 23488588-23488689,23488775-23488875,23489012-234891...    76   3e-14
01_01_0858 - 6699126-6699128,6699219-6699318,6700052-6700278,670...    72   5e-13
09_02_0115 + 4413714-4414475                                           32   0.47 
10_08_0762 - 20410681-20411834,20411999-20412098,20412200-204122...    29   3.3  
12_02_0312 + 17395716-17398112                                         29   4.4  
06_02_0090 + 11604017-11604082,11604345-11604397,11604710-11605229     29   4.4  
11_06_0042 + 19550260-19550278,19550418-19550530,19551841-195520...    28   5.8  
03_06_0108 + 31708713-31709079,31709258-31709822,31709933-317100...    28   5.8  
04_04_0243 - 23858975-23860706,23861178-23861230,23861338-238615...    28   7.7  

>01_06_0134 +
           26805329-26805430,26807130-26807230,26807876-26808032,
           26808386-26808582,26809188-26809287,26809501-26809536
          Length = 230

 Score = 83.0 bits (196), Expect = 2e-16
 Identities = 53/165 (32%), Positives = 83/165 (50%), Gaps = 1/165 (0%)
 Frame = +1

Query: 118 IKHMMAFIEQXXXXXXXXXXXXXXXXFNIEKGRLVQQQRLKIMXXXXXXXXXXXXXXXIQ 297
           I+ M+ FI Q                FNIEK +LV+ ++ KI                I+
Sbjct: 10  IQQMVRFIRQEAEEKASEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEVRKKIE 69

Query: 298 SSNMLNQARLKVLKVREDHVRNVLDEARKRLAEVPKDTKLYSELLVTLIVQALFQLMEPT 477
            S  LN +R+KVL+ ++D V ++ ++A K+L  V  +   Y  LL  L+VQ L +L EP 
Sbjct: 70  YSMQLNASRIKVLQAQDDLVNSMKEDATKQLLRVSHNHHEYKNLLKELVVQGLLRLKEPA 129

Query: 478 VTIRVRQTDKALVESLLGKAQTDYKNKIK-KDVVLKVDTENFLSP 609
           V +R R+ D   VES+L  A+ +Y +K +     + VD + +L P
Sbjct: 130 VLLRCRKEDHHHVESVLHSAKNEYASKAEVHHPEILVDHDVYLPP 174


>05_05_0231 +
           23488588-23488689,23488775-23488875,23489012-23489168,
           23489365-23489594,23489696-23489795,23489878-23489916
          Length = 242

 Score = 75.8 bits (178), Expect = 3e-14
 Identities = 54/176 (30%), Positives = 86/176 (48%), Gaps = 12/176 (6%)
 Frame = +1

Query: 118 IKHMMAFIEQXXXXXXXXXXXXXXXXFNIEKGRLVQQQRLKIMXXXXXXXXXXXXXXXIQ 297
           I+ M+ FI Q                FNIEK +LV+ ++ +I                I+
Sbjct: 10  IQQMVRFILQEAEEKASEISVAAEEEFNIEKLQLVESEKRRIRQDYERKAKQVDVGRKIE 69

Query: 298 SSNMLNQARLKVLKVREDHVRNVLDEARKRLAEVPKDTKLYSELLVTLIV---------- 447
            S  LN AR+KVL+ ++  V  + ++A K L  V KD   Y ++L  LIV          
Sbjct: 70  YSTQLNAARIKVLRAQDGVVGEMKEDAGKSLLRVTKDATAYRKVLKGLIVQRKDSEIIDQ 129

Query: 448 -QALFQLMEPTVTIRVRQTDKALVESLLGKAQTDYKNKIKKDV-VLKVDTENFLSP 609
            Q+L +L EP+V +R R+ D+  VES+L  A+ +Y  K K ++  + +D + +L P
Sbjct: 130 IQSLLRLREPSVVLRCREADRGHVESVLEAAKKEYAEKAKVNLPKILIDGKVYLPP 185


>01_01_0858 -
           6699126-6699128,6699219-6699318,6700052-6700278,
           6701032-6701188,6701422-6701522,6702147-6702251
          Length = 230

 Score = 71.7 bits (168), Expect = 5e-13
 Identities = 52/175 (29%), Positives = 81/175 (46%), Gaps = 11/175 (6%)
 Frame = +1

Query: 118 IKHMMAFIEQXXXXXXXXXXXXXXXXFNIEKGRLVQQQRLKIMXXXXXXXXXXXXXXXIQ 297
           +K M  FI Q                F IEK +LV+ ++ +I                I+
Sbjct: 11  LKQMTDFIRQEAVEKAAEIEAAAAEEFQIEKLQLVEAEKKRIRLEFERNEKQGDIKKKIE 70

Query: 298 SSNMLNQARLKVLKVREDHVRNVLDEARKRLAEVPKDTKLYSELLVTLIVQ--------- 450
            S  LN +RL+VL+ ++D   ++L+ A K L  + +D  +Y  LL   IVQ         
Sbjct: 71  YSKQLNASRLEVLQAQDDLAMSMLEAAGKELLYITRDHHVYKNLLRIFIVQDKLTKKNPE 130

Query: 451 -ALFQLMEPTVTIRVRQTDKALVESLLGKAQTDYKNKIK-KDVVLKVDTENFLSP 609
            +L +L EP V +R R+ D+ LVES+L  A+ +Y +K       + VD   +L P
Sbjct: 131 QSLLRLKEPAVILRCRKEDRELVESVLESAKNEYADKANIYPPEIMVDRNVYLPP 185


>09_02_0115 + 4413714-4414475
          Length = 253

 Score = 31.9 bits (69), Expect = 0.47
 Identities = 15/33 (45%), Positives = 18/33 (54%)
 Frame = +3

Query: 420 LRAAGHTYCAGSLPAHGTHCHHPRPSNRQGSGG 518
           LR   H+  + SLP    H HHPRP   +GS G
Sbjct: 20  LRLFSHSSASASLPLLLGHFHHPRPVPPRGSPG 52


>10_08_0762 -
           20410681-20411834,20411999-20412098,20412200-20412298,
           20412563-20414133,20415080-20415128
          Length = 990

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 17/45 (37%), Positives = 27/45 (60%)
 Frame = +1

Query: 319 ARLKVLKVREDHVRNVLDEARKRLAEVPKDTKLYSELLVTLIVQA 453
           +RL++LK R+D++ N LD+A K+  E   D   + E  V   +QA
Sbjct: 826 SRLRILKCRDDNI-NSLDDAIKQHVEACTDQPNWDEDGVVAKIQA 869


>12_02_0312 + 17395716-17398112
          Length = 798

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 15/48 (31%), Positives = 27/48 (56%)
 Frame = +1

Query: 292 IQSSNMLNQARLKVLKVREDHVRNVLDEARKRLAEVPKDTKLYSELLV 435
           ++ +N+ N   L VLK+  D + + L      L+  PKD +++ ELL+
Sbjct: 383 VKETNIPNTDILSVLKLSYDALPSDLRACFASLSTFPKDYEIFRELLI 430


>06_02_0090 + 11604017-11604082,11604345-11604397,11604710-11605229
          Length = 212

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 13/34 (38%), Positives = 14/34 (41%)
 Frame = +3

Query: 438 TYCAGSLPAHGTHCHHPRPSNRQGSGGVPARKSP 539
           T    + P H   CH  RP  R G   VP   SP
Sbjct: 131 TSLLAATPGHRRDCHRARPPPRPGGRLVPVAASP 164


>11_06_0042 +
           19550260-19550278,19550418-19550530,19551841-19552051,
           19552164-19552401,19552662-19552752,19552883-19552917,
           19554179-19554452
          Length = 326

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = +3

Query: 459 PAHGTHCHHPRPSNRQGSGGVPARKSPNRL 548
           P+    C HP  + R  SGG  A  S NR+
Sbjct: 289 PSRPAFCMHPADATRTASGGETAAASANRV 318


>03_06_0108 +
           31708713-31709079,31709258-31709822,31709933-31710015,
           31710231-31710319,31710486-31710559,31710654-31710704,
           31710807-31710883,31711454-31712031,31712388-31712555,
           31713364-31713417,31713456-31713467,31713554-31713715
          Length = 759

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +3

Query: 438 TYCAGSLPAHGTHCHHPRPSNRQGSGG 518
           TYCAG +   G H HH    ++Q  GG
Sbjct: 34  TYCAGGVDDVGHHHHHHVHQHQQQHGG 60


>04_04_0243 -
           23858975-23860706,23861178-23861230,23861338-23861538,
           23861649-23861990,23862277-23862423,23862945-23863086,
           23863876-23863959,23864772-23864779
          Length = 902

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 16/30 (53%), Positives = 17/30 (56%)
 Frame = +3

Query: 558 DQEGCCVESRHRKLFVARHLWGNRAGCSQG 647
           DQEG C  S  R +  A    GNRAGCS G
Sbjct: 240 DQEGECSTSTLRPMVEA----GNRAGCSAG 265


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,840,408
Number of Sequences: 37544
Number of extensions: 365036
Number of successful extensions: 1153
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1152
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1679486824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)