Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-5558
(415 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos... 44 7e-06
SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyc... 43 2e-05
SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces... 42 4e-05
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 40 1e-04
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces... 40 2e-04
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo... 40 2e-04
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 39 4e-04
SPAC3A12.11c |cwf2|prp3|RNA-binding protein Cwf2|Schizosaccharom... 36 0.002
SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity... 36 0.002
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 36 0.002
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc... 33 0.013
SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyce... 33 0.018
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 32 0.031
SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|ch... 32 0.031
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 32 0.041
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||... 30 0.12
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ... 30 0.12
SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protei... 30 0.12
SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 29 0.22
SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyce... 29 0.22
SPBC18H10.04c |sce3|tif48|translation initiation factor eIF4B|Sc... 29 0.29
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 28 0.66
SPAC607.09c |btn1||battenin CLN3 family protein|Schizosaccharomy... 27 0.87
SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 27 1.2
SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein Msa1|Schizosa... 26 2.0
SPBC2G2.04c |mmf1|pmf1|YjgF family protein Mmf1|Schizosaccharomy... 26 2.0
SPAC12B10.11 |exg2||glucan 1,3-beta-glucosidase Exg2|Schizosacch... 26 2.0
SPAC18B11.08c |||conserved fungal protein|Schizosaccharomyces po... 26 2.0
SPAC32A11.01 |mug8||conserved fungal protein|Schizosaccharomyces... 26 2.7
SPAC23C11.09 |||alanine-tRNA ligase |Schizosaccharomyces pombe|c... 25 3.5
SPAC23C4.17 |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual 25 3.5
SPBC342.04 |||adhesion regulating molecule protein homolog|Schiz... 25 6.1
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S... 25 6.1
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po... 25 6.1
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha... 25 6.1
SPBC18H10.03 |tif35||translation initiation factor eIF3g|Schizos... 25 6.1
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 24 8.1
SPBC31F10.14c |hip3|hir3|HIRA interacting protein Hip3|Schizosac... 24 8.1
SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 24 8.1
>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 44.4 bits (100), Expect = 7e-06
Identities = 20/43 (46%), Positives = 27/43 (62%)
Frame = +3
Query: 3 DPQTLKSKGYGFVSYLKKSEAESAITSMNGQWLGSRSIRTNWA 131
DPQT S+GYGFV + +++ +SA+ M GQ G R IR A
Sbjct: 221 DPQTNVSRGYGFVRFTDENDQKSALAEMQGQICGDRPIRVGLA 263
Score = 37.1 bits (82), Expect = 0.001
Identities = 18/56 (32%), Positives = 33/56 (58%)
Frame = +1
Query: 214 SNCTVYCGGLTTGLTEELMQKTLQPFGTIQEIRVFKDKGYALMRFWTKESGTHAID 381
+N TV+ GGL+ ++EE ++ Q FG I +++ KG ++F ++S AI+
Sbjct: 301 ANSTVFVGGLSKFVSEEELKYLFQNFGEIVYVKIPPGKGCGFVQFVNRQSAEIAIN 356
Score = 35.5 bits (78), Expect = 0.003
Identities = 15/35 (42%), Positives = 21/35 (60%)
Frame = +3
Query: 24 KGYGFVSYLKKSEAESAITSMNGQWLGSRSIRTNW 128
KG GFV ++ + AE AI + G LG+ IR +W
Sbjct: 338 KGCGFVQFVNRQSAEIAINQLQGYPLGNSRIRLSW 372
>SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 529
Score = 42.7 bits (96), Expect = 2e-05
Identities = 22/68 (32%), Positives = 38/68 (55%)
Frame = +1
Query: 202 QSSGSNCTVYCGGLTTGLTEELMQKTLQPFGTIQEIRVFKDKGYALMRFWTKESGTHAID 381
Q SG+ V+ G L G+TE+ +++ L+PFG I +I++ ++ A + F + AI
Sbjct: 200 QQSGACRNVFLGNLPNGITEDEIREDLEPFGPIDQIKIVTERNIAFVHFLNIAA---AIK 256
Query: 382 AVHNTDMN 405
AV +N
Sbjct: 257 AVQELPLN 264
>SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 632
Score = 41.9 bits (94), Expect = 4e-05
Identities = 20/57 (35%), Positives = 33/57 (57%)
Frame = +1
Query: 217 NCTVYCGGLTTGLTEELMQKTLQPFGTIQEIRVFKDKGYALMRFWTKESGTHAIDAV 387
N TV+ GGL + L+E+ +Q QPFG I I++ KG +++ K + AI+ +
Sbjct: 296 NTTVFVGGLASNLSEKDLQVCFQPFGRILNIKIPFGKGCGFVQYSEKSAAEKAINTM 352
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 40.3 bits (90), Expect = 1e-04
Identities = 27/97 (27%), Positives = 45/97 (46%), Gaps = 8/97 (8%)
Frame = +1
Query: 148 APKNELNSKPLTFDEVYNQS--SGSNCTVYCGGLTTGLTEELMQKTLQPFGTIQEIRVFK 321
A +E S P V S + ++ ++Y G L +TE ++ + G + IRV +
Sbjct: 54 AEPSESTSTPTNASSVATPSGTAPTSASLYVGELDPSVTEAMLFELFNSIGPVASIRVCR 113
Query: 322 DK------GYALMRFWTKESGTHAIDAVHNTDMNGQP 414
D GYA + F E G A+D ++ T + G+P
Sbjct: 114 DAVTRRSLGYAYVNFHNMEDGEKALDELNYTLIKGRP 150
Score = 35.9 bits (79), Expect = 0.002
Identities = 15/33 (45%), Positives = 20/33 (60%)
Frame = +3
Query: 18 KSKGYGFVSYLKKSEAESAITSMNGQWLGSRSI 116
KSKG+GFV Y EA A+T MN + L + +
Sbjct: 402 KSKGFGFVCYTTPEEANKAVTEMNQRMLAGKPL 434
Score = 29.1 bits (62), Expect = 0.29
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +3
Query: 21 SKGYGFVSYLKKSEAESAITSMNGQWLGSRSI 116
+KGYGFV + A +AI +NG L + +
Sbjct: 207 AKGYGFVHFDSVESANAAIEHVNGMLLNDKKV 238
Score = 29.1 bits (62), Expect = 0.29
Identities = 16/67 (23%), Positives = 30/67 (44%), Gaps = 5/67 (7%)
Frame = +1
Query: 226 VYCGGLTTGLTEELMQKTLQPFGTIQEIRVFKD-----KGYALMRFWTKESGTHAIDAVH 390
VY L T +TE+ FG I + + KD +G+ + + E A+D ++
Sbjct: 263 VYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQNDKPRGFGFVNYANHECAQKAVDELN 322
Query: 391 NTDMNGQ 411
+ + G+
Sbjct: 323 DKEYKGK 329
Score = 27.5 bits (58), Expect = 0.87
Identities = 18/80 (22%), Positives = 35/80 (43%), Gaps = 5/80 (6%)
Frame = +1
Query: 190 EVYNQSSGSNCTVYCGGLTTGLTEELMQKTLQPFGTIQEIRVFKD-----KGYALMRFWT 354
E N+ G N ++ L + +E ++ FGTI ++ D KG+ + + T
Sbjct: 356 EKMNKYQGVN--LFIKNLQDEVDDERLKAEFSAFGTITSAKIMTDEQGKSKGFGFVCYTT 413
Query: 355 KESGTHAIDAVHNTDMNGQP 414
E A+ ++ + G+P
Sbjct: 414 PEEANKAVTEMNQRMLAGKP 433
Score = 25.8 bits (54), Expect = 2.7
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = +3
Query: 9 QTLKSKGYGFVSYLKKSEAESAITSMN 89
Q K +G+GFV+Y A+ A+ +N
Sbjct: 296 QNDKPRGFGFVNYANHECAQKAVDELN 322
>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 609
Score = 39.9 bits (89), Expect = 2e-04
Identities = 19/42 (45%), Positives = 25/42 (59%)
Frame = +3
Query: 6 PQTLKSKGYGFVSYLKKSEAESAITSMNGQWLGSRSIRTNWA 131
P T SKGYGFVS+ EA AI ++NG G + + N+A
Sbjct: 456 PSTEISKGYGFVSFSHPFEAVQAINTLNGVLFGKKRLFVNYA 497
>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
Sap49|Schizosaccharomyces pombe|chr 1|||Manual
Length = 335
Score = 39.5 bits (88), Expect = 2e-04
Identities = 18/38 (47%), Positives = 27/38 (71%)
Frame = +3
Query: 18 KSKGYGFVSYLKKSEAESAITSMNGQWLGSRSIRTNWA 131
+SKGYGFVSY A++AI +MN Q+L ++ I ++A
Sbjct: 138 RSKGYGFVSYDSFETADAAIEAMNNQFLMNKPITVSYA 175
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 38.7 bits (86), Expect = 4e-04
Identities = 22/77 (28%), Positives = 39/77 (50%), Gaps = 6/77 (7%)
Frame = +1
Query: 199 NQSSGSNCTVYCGGLTTGLTEELMQKTLQPFGTIQEIRVFKD------KGYALMRFWTKE 360
+Q S CTV+ G L+ + ++ + + + +GTI RV D KGY + F T E
Sbjct: 256 SQDSNETCTVFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFETPE 315
Query: 361 SGTHAIDAVHNTDMNGQ 411
+ A+ A +++G+
Sbjct: 316 AAKAAVAANGTKEIDGR 332
Score = 31.1 bits (67), Expect = 0.071
Identities = 13/43 (30%), Positives = 26/43 (60%)
Frame = +3
Query: 3 DPQTLKSKGYGFVSYLKKSEAESAITSMNGQWLGSRSIRTNWA 131
DPQ+ + KG+G+V++ A+ + MNG ++ R R +++
Sbjct: 400 DPQSGRLKGFGYVTFSDIDSAKKCV-EMNGHFIAGRPCRLDFS 441
Score = 27.1 bits (57), Expect = 1.2
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +3
Query: 3 DPQTLKSKGYGFVSYLKKSEAESAITSMNG 92
D Q+ +SKGYG+V + + EA A + NG
Sbjct: 297 DGQSGRSKGYGYVDF-ETPEAAKAAVAANG 325
Score = 24.2 bits (50), Expect = 8.1
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = +1
Query: 199 NQSSGSNCTVYCGGLTTGLTEELMQKTLQPFGTIQEIRVFKD 324
+Q S + TV+ G L+ TE+ + G IQ IR+ D
Sbjct: 359 DQLSEPSDTVFVGNLSFNATEDDLSTAFGGCGDIQSIRLPTD 400
>SPAC3A12.11c |cwf2|prp3|RNA-binding protein
Cwf2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 388
Score = 35.9 bits (79), Expect = 0.002
Identities = 18/64 (28%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Frame = +1
Query: 217 NCTVYCGGLT-TGLTEELMQKTLQPFGTIQEIRVFKDKGYALMRFWTKESGTHAIDAVHN 393
N T+Y GG+T T EE++ + +G I+ IRV +G A + + + + A +A+ +
Sbjct: 173 NYTLYVGGITPTDDIEEIVSRHFAEWGDIERIRVLNSRGIAFITYLNEANAQFAKEAMAH 232
Query: 394 TDMN 405
++
Sbjct: 233 QSLD 236
Score = 26.2 bits (55), Expect = 2.0
Identities = 13/42 (30%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Frame = +3
Query: 9 QTLKSKGYGFVSYLKKSEAESAITSMNGQWLG-SRSIRTNWA 131
+ L S+G F++YL ++ A+ A +M Q L + WA
Sbjct: 205 RVLNSRGIAFITYLNEANAQFAKEAMAHQSLDHDECLNVRWA 246
>SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity
factor complex subunit Ctf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 363
Score = 35.9 bits (79), Expect = 0.002
Identities = 15/42 (35%), Positives = 20/42 (47%)
Frame = +3
Query: 3 DPQTLKSKGYGFVSYLKKSEAESAITSMNGQWLGSRSIRTNW 128
DP+T KGYGF + A+ +N LG R IR +
Sbjct: 41 DPETGSGKGYGFCEFFDSETTAMAVRKLNNSELGPRKIRVEF 82
>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 422
Score = 35.9 bits (79), Expect = 0.002
Identities = 15/42 (35%), Positives = 26/42 (61%)
Frame = +3
Query: 3 DPQTLKSKGYGFVSYLKKSEAESAITSMNGQWLGSRSIRTNW 128
DP++ + KGYGF Y + A SA+ ++N G+R +R ++
Sbjct: 39 DPESGQPKGYGFCEYHDPATAASAVRNLNNYDAGTRRLRVDF 80
>SPAC328.05 |||RNA-binding protein involved in export of
mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 33.5 bits (73), Expect = 0.013
Identities = 14/40 (35%), Positives = 26/40 (65%)
Frame = +3
Query: 12 TLKSKGYGFVSYLKKSEAESAITSMNGQWLGSRSIRTNWA 131
T +SKG+G V + +++A S+I +NG G R ++ ++A
Sbjct: 316 TGRSKGFGVVQFENENDAASSIEKLNGYRYGGRPLQLSYA 355
Score = 25.0 bits (52), Expect = 4.7
Identities = 9/31 (29%), Positives = 17/31 (54%)
Frame = +1
Query: 319 KDKGYALMRFWTKESGTHAIDAVHNTDMNGQ 411
+ +G ++ + + HAI +HNTD G+
Sbjct: 221 RSRGIGIVVMSSMKEAMHAIQMLHNTDFMGR 251
>SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 297
Score = 33.1 bits (72), Expect = 0.018
Identities = 14/31 (45%), Positives = 21/31 (67%)
Frame = +3
Query: 3 DPQTLKSKGYGFVSYLKKSEAESAITSMNGQ 95
+P T S+G+GF+S+ EA SAI ++N Q
Sbjct: 135 EPVTKASRGFGFLSFSTVEEATSAIDNLNSQ 165
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 32.3 bits (70), Expect = 0.031
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = +3
Query: 18 KSKGYGFVSYLKKSEAESAITSMNGQWLGSRSIR 119
+SKG+G++ Y A +A+ MNG L R++R
Sbjct: 378 RSKGFGYIQYRNPISARNALEKMNGFDLAGRNMR 411
Score = 28.7 bits (61), Expect = 0.38
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +3
Query: 27 GYGFVSYLKKSEAESAITSMNGQWLGSRSIRTN 125
G FV + AE AIT ++ +W G R+I+ +
Sbjct: 555 GQIFVKFENADFAEKAITGLHQRWFGGRTIKAS 587
Score = 28.3 bits (60), Expect = 0.50
Identities = 14/58 (24%), Positives = 33/58 (56%), Gaps = 5/58 (8%)
Frame = +1
Query: 253 LTEELMQKTLQPFGTIQEIRVFKD-----KGYALMRFWTKESGTHAIDAVHNTDMNGQ 411
LT+E ++ +PFG I+ + + +D KG+ +++ S +A++ ++ D+ G+
Sbjct: 351 LTDEDVKAIFEPFGDIEFVHLQRDDQNRSKGFGYIQYRNPISARNALEKMNGFDLAGR 408
>SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 32.3 bits (70), Expect = 0.031
Identities = 13/38 (34%), Positives = 24/38 (63%)
Frame = +3
Query: 18 KSKGYGFVSYLKKSEAESAITSMNGQWLGSRSIRTNWA 131
K++G+GFVS+ + A NG+++GSR ++ + A
Sbjct: 68 KTRGFGFVSFKDSDQFLKAWREKNGKYIGSRPVKLSRA 105
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 31.9 bits (69), Expect = 0.041
Identities = 13/43 (30%), Positives = 27/43 (62%)
Frame = +3
Query: 3 DPQTLKSKGYGFVSYLKKSEAESAITSMNGQWLGSRSIRTNWA 131
+P+T +++GYGFV++ +A+ A + + L R +R ++A
Sbjct: 39 NPETGENRGYGFVTFSMLEDAQRAAKELKNKKLHGRILRLDFA 81
Score = 30.3 bits (65), Expect = 0.12
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +3
Query: 27 GYGFVSYLKKSEAESAITSMNGQWLGSRSIRTNWA 131
G+ FV + AE A+ S+NG + R I +WA
Sbjct: 149 GFAFVWMKDRKAAEEAMNSLNGTEIDGRPIAVDWA 183
Score = 25.4 bits (53), Expect = 3.5
Identities = 10/33 (30%), Positives = 20/33 (60%)
Frame = +3
Query: 18 KSKGYGFVSYLKKSEAESAITSMNGQWLGSRSI 116
+SKG+GF+ ++ A A+ +NG+ + + I
Sbjct: 537 RSKGFGFMQFISHKYALMALRWLNGREITVKKI 569
>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 710
Score = 30.3 bits (65), Expect = 0.12
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = +3
Query: 6 PQTLKSKGYGFVSYLKKSEAESAITSMNGQWLGSRSI 116
P + SKGYGFV++ + A A ++NG +G + I
Sbjct: 419 PNSGISKGYGFVAFRQIEAAVRAKDTLNGMMVGKKRI 455
>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 30.3 bits (65), Expect = 0.12
Identities = 11/57 (19%), Positives = 32/57 (56%)
Frame = +1
Query: 223 TVYCGGLTTGLTEELMQKTLQPFGTIQEIRVFKDKGYALMRFWTKESGTHAIDAVHN 393
T++ GG+T + E +++ + FG++Q + + + + ++ + +++ A A+ N
Sbjct: 407 TLFLGGITRSVREPVLRSMFERFGSVQSLILNHNYRHGFLKMFRRDAAEKAQVAMEN 463
Score = 25.0 bits (52), Expect = 4.7
Identities = 10/33 (30%), Positives = 16/33 (48%)
Frame = +3
Query: 30 YGFVSYLKKSEAESAITSMNGQWLGSRSIRTNW 128
+GF+ ++ AE A +M +IRT W
Sbjct: 443 HGFLKMFRRDAAEKAQVAMENVPFADTTIRTKW 475
>SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protein
Tgc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 348
Score = 30.3 bits (65), Expect = 0.12
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = +3
Query: 18 KSKGYGFVSYLKKSEAESAITSMNGQWLGSRSI 116
+ +G+GFVS+ + AI MNG+ +G ++
Sbjct: 256 RGRGFGFVSFANAEDQSRAIEEMNGKQVGDLTL 288
>SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 243
Score = 29.5 bits (63), Expect = 0.22
Identities = 16/69 (23%), Positives = 36/69 (52%), Gaps = 6/69 (8%)
Frame = +1
Query: 223 TVYCGGLTTGLTEELMQKTLQPFGTIQEI--RVFK----DKGYALMRFWTKESGTHAIDA 384
T+ LT +T+E + + +G I I ++K +KGY + + + +A+D
Sbjct: 100 TILVENLTRNVTKEHIAEIFGIYGLIDHIFMPIYKKSELNKGYCYIEYVYHDQAANAVDK 159
Query: 385 VHNTDMNGQ 411
++N +++G+
Sbjct: 160 MNNAELDGE 168
>SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 217
Score = 29.5 bits (63), Expect = 0.22
Identities = 18/79 (22%), Positives = 35/79 (44%), Gaps = 6/79 (7%)
Frame = +1
Query: 184 FDEVYNQSSGSNCTVYCGGLTTGLTEELMQKTLQPFGTIQEIRVFKD------KGYALMR 345
F ++Q + +Y G L L E+ + FG +I + +D KG+A ++
Sbjct: 19 FSSSWHQDYSDSAYIYIGNLDFDLNEDDILCVFSEFGEPVDINLVRDKETGKSKGFAFLK 78
Query: 346 FWTKESGTHAIDAVHNTDM 402
+ + S A+D + N +
Sbjct: 79 YEDQRSTVLAVDNMTNVKL 97
>SPBC18H10.04c |sce3|tif48|translation initiation factor
eIF4B|Schizosaccharomyces pombe|chr 2|||Manual
Length = 388
Score = 29.1 bits (62), Expect = 0.29
Identities = 13/39 (33%), Positives = 26/39 (66%)
Frame = +3
Query: 3 DPQTLKSKGYGFVSYLKKSEAESAITSMNGQWLGSRSIR 119
DP T +S+G+G+V + + ++ SA +++G+ L R +R
Sbjct: 126 DPLTERSRGFGYVEF-ETADTLSAALALSGEDLMGRPVR 163
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 27.9 bits (59), Expect = 0.66
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +3
Query: 6 PQTLKSKGYGFVSYLKKSEAESAITSMNG 92
P S G+GFV + K+ A +A+ +MNG
Sbjct: 659 PGKYLSMGFGFVEFKDKASAVAAMHAMNG 687
>SPAC607.09c |btn1||battenin CLN3 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 396
Score = 27.5 bits (58), Expect = 0.87
Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = -1
Query: 220 NCYRSSDCRPRRKSE-AWSSVHSSEPVVLLVAQLVRMDLEPSHCPF 86
N Y S + E A S+V SS+ + +A LV + LEPS C F
Sbjct: 339 NVYHSLQTTESSQRELAISTVGSSDSSGIFLASLVSLFLEPSLCHF 384
>SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 121
Score = 27.1 bits (57), Expect = 1.2
Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 6/54 (11%)
Frame = +1
Query: 238 GLTTGLTEELMQKTLQPFGTIQEIRVFKD------KGYALMRFWTKESGTHAID 381
G+ TEE ++ FG ++ + + D KGYAL+ + T E A+D
Sbjct: 16 GVHPEATEEQVEDLFADFGPVKNLHLNLDRRTGYVKGYALIEYATLEQAQKAVD 69
>SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein
Msa1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 533
Score = 26.2 bits (55), Expect = 2.0
Identities = 10/48 (20%), Positives = 27/48 (56%)
Frame = +1
Query: 253 LTEELMQKTLQPFGTIQEIRVFKDKGYALMRFWTKESGTHAIDAVHNT 396
+T++ + L+P+G ++++ D+ L+RF ++ A A+ ++
Sbjct: 173 ITKKDIDNLLEPYGEVEDVTEIPDQSAFLVRFVYRDEAIAAYTALKHS 220
>SPBC2G2.04c |mmf1|pmf1|YjgF family protein Mmf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 162
Score = 26.2 bits (55), Expect = 2.0
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = +1
Query: 154 KNELNSKPLTFDEVYNQSSGSNCTVYCGG 240
K +NS L+ YNQ+ +N +YC G
Sbjct: 39 KTPINSPKLSSAGPYNQAIKANGVIYCSG 67
>SPAC12B10.11 |exg2||glucan 1,3-beta-glucosidase
Exg2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 570
Score = 26.2 bits (55), Expect = 2.0
Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Frame = -2
Query: 144 WFYL-WPSWCGWTWSRATARSWM*SLIPPLIFSNTR 40
WFY W + WS +SW+ L+P L +S T+
Sbjct: 516 WFYWNWDTENATQWSYK--KSWLAGLLPRLAYSTTK 549
>SPAC18B11.08c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 95
Score = 26.2 bits (55), Expect = 2.0
Identities = 13/38 (34%), Positives = 25/38 (65%)
Frame = -2
Query: 405 VHISVVNSIDCVGATFLCPESHQSISFVLEDSDLLNSS 292
V +S+V++ C+ A FL + ++F+L S+LLN++
Sbjct: 25 VGLSLVSTATCMAALFLRFKLIAWVAFILTFSNLLNAN 62
>SPAC32A11.01 |mug8||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 720
Score = 25.8 bits (54), Expect = 2.7
Identities = 13/47 (27%), Positives = 23/47 (48%)
Frame = -2
Query: 399 ISVVNSIDCVGATFLCPESHQSISFVLEDSDLLNSSEWLQGLLHQFF 259
I NS+ G+T C +S ++D++ L +++QG FF
Sbjct: 600 IDDTNSV--TGSTLSCSFDEMKLSDKIDDANSLKDDDFIQGSKKDFF 644
>SPAC23C11.09 |||alanine-tRNA ligase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 959
Score = 25.4 bits (53), Expect = 3.5
Identities = 12/44 (27%), Positives = 21/44 (47%)
Frame = -2
Query: 303 LNSSEWLQGLLHQFFGQSGGQTSTVHRAIATGALIVDLVESQRL 172
L EW Q + H G+SGG+ T + + L +D+ + +
Sbjct: 908 LTPQEWSQKVCHSIGGRSGGKGDTC-QGVGDKPLSIDVAVEEAI 950
>SPAC23C4.17 |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual
Length = 674
Score = 25.4 bits (53), Expect = 3.5
Identities = 9/22 (40%), Positives = 11/22 (50%)
Frame = -1
Query: 70 DSASDFFKYETKPYPFDLRVCG 5
D F +Y KP P R+CG
Sbjct: 44 DEFDSFMEYMRKPLPTTFRICG 65
>SPBC342.04 |||adhesion regulating molecule protein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 291
Score = 24.6 bits (51), Expect = 6.1
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = -2
Query: 345 SHQSISFVLEDSDLLNSSEWLQGLLHQFFGQSGGQTSTV 229
S +S +SD +NSSE ++ LL Q+G STV
Sbjct: 149 SKESSEIGAPNSDEINSSEAVRNLLATISAQAGFGGSTV 187
>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
Tor2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2337
Score = 24.6 bits (51), Expect = 6.1
Identities = 10/34 (29%), Positives = 19/34 (55%)
Frame = -1
Query: 103 PSHCPFMDVIADSASDFFKYETKPYPFDLRVCGS 2
P P + I + ++F +++ KP P D+R G+
Sbjct: 1198 PHISPEIIQILLNLAEFMEHDDKPLPIDIRTLGA 1231
>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1014
Score = 24.6 bits (51), Expect = 6.1
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = +3
Query: 24 KGYGFVSYLKKSEAESAITSMNGQWLGSR 110
KG+G+V +AE+A+ S G+ LG+R
Sbjct: 796 KGFGYVVMTTNQDAENAL-SAAGKQLGNR 823
>SPBC660.15 |||mRNA cleavage factor complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 24.6 bits (51), Expect = 6.1
Identities = 9/26 (34%), Positives = 17/26 (65%)
Frame = +3
Query: 3 DPQTLKSKGYGFVSYLKKSEAESAIT 80
D T + +G+GFV+Y +S E+ ++
Sbjct: 281 DKDTGRPRGFGFVTYENESAVEATMS 306
>SPBC18H10.03 |tif35||translation initiation factor
eIF3g|Schizosaccharomyces pombe|chr 2|||Manual
Length = 282
Score = 24.6 bits (51), Expect = 6.1
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +3
Query: 3 DPQTLKSKGYGFVSYLKKSEAESAITSMNG 92
D +T ++KG+ FVSY + A A ++G
Sbjct: 236 DKETGRAKGFAFVSYYDRDCAIKARDRLDG 265
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 24.2 bits (50), Expect = 8.1
Identities = 10/16 (62%), Positives = 10/16 (62%)
Frame = -3
Query: 152 GAGGFTCGPVGADGPG 105
G GGF GP G GPG
Sbjct: 257 GPGGFGGGPGGHGGPG 272
>SPBC31F10.14c |hip3|hir3|HIRA interacting protein
Hip3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1630
Score = 24.2 bits (50), Expect = 8.1
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = -2
Query: 372 VGATFLCPESHQSISFVLEDSDLLNSSEWLQG 277
+G+ + P+SHQS S L +D + ++ G
Sbjct: 945 IGSEYYVPQSHQSDSVNLTSNDAIKIIPFILG 976
>SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 116
Score = 24.2 bits (50), Expect = 8.1
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = +3
Query: 24 KGYGFVSYLKKSEAESAITSMNGQWLGSRSIRTN 125
+ Y FV + + +A+ A+ +MN L R IR +
Sbjct: 46 RSYAFVEFDEPEDAKEAMENMNYSILCDRCIRVS 79
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,740,630
Number of Sequences: 5004
Number of extensions: 31719
Number of successful extensions: 163
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 144287194
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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