Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-5555
(719 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 30 0.29
SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1... 28 1.2
SPAC23A1.18c |mrp51||mitochondrial ribosomal protein subunit L51... 26 4.7
SPAC105.03c |||transcription factor |Schizosaccharomyces pombe|c... 26 6.2
SPBC1604.19c |||TRAPP complex subunit Trs85 |Schizosaccharomyces... 26 6.2
SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomy... 26 6.2
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 30.3 bits (65), Expect = 0.29
Identities = 23/79 (29%), Positives = 39/79 (49%), Gaps = 5/79 (6%)
Frame = -2
Query: 700 SSGLLEEPEKVTSSSFVSFSHICALSQILNS**TPVI--THLNPEETLNRQNKTNHTTSL 527
SS +L +TSSS V+ S S +LNS TP+ T LN + + N +T++
Sbjct: 3170 SSSVLNSSTAITSSSIVNSSTPITSSSVLNS-STPITSSTTLNTSTPITSSSVLNSSTAI 3228
Query: 526 LA---FPPKSPLQHSTIIN 479
+ +P+ S+++N
Sbjct: 3229 TSSSVLNSSTPITSSSVLN 3247
Score = 29.9 bits (64), Expect = 0.38
Identities = 23/79 (29%), Positives = 38/79 (48%), Gaps = 5/79 (6%)
Frame = -2
Query: 700 SSGLLEEPEKVTSSSFVSFSHICALSQILNS**TPVI--THLNPEETLNRQNKTNHTTSL 527
SS +L +TSS+ V+ S S +LNS TP+ T +N + N +TS+
Sbjct: 2318 SSSVLNSSTPITSSTVVNTSTPITSSSVLNS-STPITSSTVVNTSTPITSSTALNTSTSI 2376
Query: 526 LA---FPPKSPLQHSTIIN 479
+ +P+ ST++N
Sbjct: 2377 TSSSVLNSSTPITSSTVVN 2395
Score = 29.5 bits (63), Expect = 0.51
Identities = 25/79 (31%), Positives = 38/79 (48%), Gaps = 5/79 (6%)
Frame = -2
Query: 700 SSGLLEEPEKVTSSSFVSFSHICALSQILNS**TPVI--THLN---PEETLNRQNKTNHT 536
SS +L +TSS+ V+ S S +LNS TP+ T LN P + + N +
Sbjct: 2126 SSSVLNSSTPITSSTVVNSSTPITSSSVLNS-STPITSSTALNTSTPITSSSVLNSSTPI 2184
Query: 535 TSLLAFPPKSPLQHSTIIN 479
TS +P+ ST++N
Sbjct: 2185 TSSTVVNSSTPITSSTVVN 2203
Score = 29.5 bits (63), Expect = 0.51
Identities = 24/79 (30%), Positives = 36/79 (45%), Gaps = 5/79 (6%)
Frame = -2
Query: 700 SSGLLEEPEKVTSSSFVSFSHICALSQILNS**TP-----VITHLNPEETLNRQNKTNHT 536
SS +L +TSS+ V+ S S +LNS TP V+ P + N +
Sbjct: 2978 SSSVLNSSTPITSSTVVNTSTPITSSSVLNS-STPITSSTVVNTSTPITSSTVVNSSTPI 3036
Query: 535 TSLLAFPPKSPLQHSTIIN 479
TS A +P+ ST++N
Sbjct: 3037 TSSTALNTSTPITSSTVLN 3055
Score = 29.1 bits (62), Expect = 0.67
Identities = 22/79 (27%), Positives = 39/79 (49%), Gaps = 5/79 (6%)
Frame = -2
Query: 700 SSGLLEEPEKVTSSSFVSFSHICALSQILNS**TPVI--THLNPEETLNRQNKTNHTTSL 527
SS +L +TSS+ V+ S S +LNS TP+ T +N ++ + N +T +
Sbjct: 2378 SSSVLNSSTPITSSTVVNTSTPITSSSVLNS-STPITSSTVVNTSTSITSSSVLNSSTPI 2436
Query: 526 LA---FPPKSPLQHSTIIN 479
+ +P+ ST++N
Sbjct: 2437 TSSSVLNSSTPITSSTVVN 2455
Score = 29.1 bits (62), Expect = 0.67
Identities = 23/79 (29%), Positives = 35/79 (44%), Gaps = 5/79 (6%)
Frame = -2
Query: 700 SSGLLEEPEKVTSSSFVSFSHICALSQILNS**TP-----VITHLNPEETLNRQNKTNHT 536
SS +L +TSSS ++ S S +LNS TP V+ P + N +
Sbjct: 3338 SSSVLNSSTAITSSSILNSSTPVTSSSVLNS-STPITSSTVVNSSTPITSSTALNTSTPI 3396
Query: 535 TSLLAFPPKSPLQHSTIIN 479
TS +P+ ST++N
Sbjct: 3397 TSSSVLNSSTPITSSTVVN 3415
Score = 28.7 bits (61), Expect = 0.88
Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 5/79 (6%)
Frame = -2
Query: 700 SSGLLEEPEKVTSSSFVSFSHICALSQILNS**TPVITH--LNPEETLNRQ---NKTNHT 536
SS +L +TSSS ++ S S +LNS TP+ + LN + N +
Sbjct: 386 SSSVLNSSTPITSSSILNTSTPITSSSVLNS-STPITSSSILNSSTPITSSTVLNSSTPI 444
Query: 535 TSLLAFPPKSPLQHSTIIN 479
TS A +P+ S+++N
Sbjct: 445 TSSTALNTSTPITSSSVLN 463
Score = 28.3 bits (60), Expect = 1.2
Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 5/79 (6%)
Frame = -2
Query: 700 SSGLLEEPEKVTSSSFVSFSHICALSQILNS**TPVI--THLNPEETLNRQ---NKTNHT 536
SS +L +TSS+ V+ S S +LNS TP+ T +N + R N +
Sbjct: 542 SSSVLNSSTPITSSTVVNTSTPITSSSVLNS-STPITSSTVVNTSTPITRYSVLNSSTPI 600
Query: 535 TSLLAFPPKSPLQHSTIIN 479
TS +P+ S+++N
Sbjct: 601 TSSTVLNSSTPITSSSVLN 619
Score = 28.3 bits (60), Expect = 1.2
Identities = 23/79 (29%), Positives = 35/79 (44%), Gaps = 5/79 (6%)
Frame = -2
Query: 700 SSGLLEEPEKVTSSSFVSFSHICALSQILNS**TP-----VITHLNPEETLNRQNKTNHT 536
SS +L +TSS+ V+ S S +LNS TP V+ P + N +
Sbjct: 2726 SSSVLNSSTPITSSTVVNTSTPITSSSVLNS-STPITSSTVVNTSTPITSSTALNTSTPI 2784
Query: 535 TSLLAFPPKSPLQHSTIIN 479
TS +P+ ST++N
Sbjct: 2785 TSSSVLNSSTPITSSTVVN 2803
Score = 28.3 bits (60), Expect = 1.2
Identities = 23/79 (29%), Positives = 36/79 (45%), Gaps = 5/79 (6%)
Frame = -2
Query: 700 SSGLLEEPEKVTSSSFVSFSHICALSQILNS**TP-----VITHLNPEETLNRQNKTNHT 536
SS +L +TSSS ++ S S +LNS TP V+ P + + N +
Sbjct: 3218 SSSVLNSSTAITSSSVLNSSTPITSSSVLNS-STPITSSTVVNTSTPITSSSVLNSSTPI 3276
Query: 535 TSLLAFPPKSPLQHSTIIN 479
TS +P+ ST++N
Sbjct: 3277 TSSTVVNTSTPITSSTVVN 3295
Score = 27.9 bits (59), Expect = 1.5
Identities = 23/79 (29%), Positives = 35/79 (44%), Gaps = 5/79 (6%)
Frame = -2
Query: 700 SSGLLEEPEKVTSSSFVSFSHICALSQILNS**TP-----VITHLNPEETLNRQNKTNHT 536
SS +L +TSS+ V+ S S +LNS TP V+ P + N +
Sbjct: 1310 SSSVLNSSTPITSSTVVNTSTPITSSSVLNS-STPITSSTVVNSSTPITSSTVVNTSTPI 1368
Query: 535 TSLLAFPPKSPLQHSTIIN 479
TS +P+ ST++N
Sbjct: 1369 TSSTVVNTSTPITSSTVVN 1387
Score = 27.9 bits (59), Expect = 1.5
Identities = 24/79 (30%), Positives = 38/79 (48%), Gaps = 5/79 (6%)
Frame = -2
Query: 700 SSGLLEEPEKVTSSSFVSFSHICALSQILNS**TPVI--THLN---PEETLNRQNKTNHT 536
SS +L +TSS+ ++ S S +LNS TP+ T LN P + + N +
Sbjct: 1766 SSSVLNSSTPITSSTALNTSTPITSSSVLNS-STPITSSTALNTSTPITSSSVLNSSTPI 1824
Query: 535 TSLLAFPPKSPLQHSTIIN 479
TS +P+ ST++N
Sbjct: 1825 TSSTVVNTSTPITSSTVVN 1843
Score = 27.9 bits (59), Expect = 1.5
Identities = 22/79 (27%), Positives = 38/79 (48%), Gaps = 5/79 (6%)
Frame = -2
Query: 700 SSGLLEEPEKVTSSSFVSFSHICALSQILNS**TPVI--THLNPEETLNRQNKTNHTTSL 527
SS +L +TSS+ V+ S S +LNS TP+ T LN + + N +T +
Sbjct: 1934 SSSVLNSSTPITSSTVVNSSTPITSSSVLNS-STPITSSTALNTSTPITSSSVLNSSTPI 1992
Query: 526 LA---FPPKSPLQHSTIIN 479
+ +P+ S+++N
Sbjct: 1993 TSSSVLNTSTPITSSSVLN 2011
Score = 27.9 bits (59), Expect = 1.5
Identities = 23/79 (29%), Positives = 36/79 (45%), Gaps = 5/79 (6%)
Frame = -2
Query: 700 SSGLLEEPEKVTSSSFVSFSHICALSQILNS**TP-----VITHLNPEETLNRQNKTNHT 536
SS +L +TSSS ++ S S +LNS TP V+ P + N +
Sbjct: 1982 SSSVLNSSTPITSSSVLNTSTPITSSSVLNS-STPITSSTVVNTSTPITSSTVVNSSTPI 2040
Query: 535 TSLLAFPPKSPLQHSTIIN 479
TS A +P+ S+++N
Sbjct: 2041 TSSTALNTSTPITSSSVLN 2059
Score = 27.9 bits (59), Expect = 1.5
Identities = 23/79 (29%), Positives = 36/79 (45%), Gaps = 5/79 (6%)
Frame = -2
Query: 700 SSGLLEEPEKVTSSSFVSFSHICALSQILNS**TP-----VITHLNPEETLNRQNKTNHT 536
SS +L +TSS+ V+ S S +LNS TP V+ P + N +
Sbjct: 2654 SSSVLNSSTPITSSTVVNTSTPITSSSVLNS-STPITSSTVVNTSTPITSSTVVNSSTPI 2712
Query: 535 TSLLAFPPKSPLQHSTIIN 479
TS A +P+ S+++N
Sbjct: 2713 TSSTALNTSTPITSSSVLN 2731
Score = 27.9 bits (59), Expect = 1.5
Identities = 23/79 (29%), Positives = 36/79 (45%), Gaps = 5/79 (6%)
Frame = -2
Query: 700 SSGLLEEPEKVTSSSFVSFSHICALSQILNS**TP-----VITHLNPEETLNRQNKTNHT 536
SS +L +TSS+ V+ S S +LNS TP V+ P + N +
Sbjct: 2882 SSSVLNSSTPITSSTVVNTSTPITSSSVLNS-STPITSSTVVNTSTPITSSTVVNSSTPI 2940
Query: 535 TSLLAFPPKSPLQHSTIIN 479
TS A +P+ S+++N
Sbjct: 2941 TSSTALNTSTPITSSSVLN 2959
Score = 27.9 bits (59), Expect = 1.5
Identities = 25/79 (31%), Positives = 36/79 (45%), Gaps = 5/79 (6%)
Frame = -2
Query: 700 SSGLLEEPEKVTSSSFVSFSHICALSQILNS**TPVITH--LNPEETLNRQ---NKTNHT 536
SS L +TSSS ++ S S ILNS TPV + LN + N +
Sbjct: 3326 SSTALNTSTPITSSSVLNSSTAITSSSILNS-STPVTSSSVLNSSTPITSSTVVNSSTPI 3384
Query: 535 TSLLAFPPKSPLQHSTIIN 479
TS A +P+ S+++N
Sbjct: 3385 TSSTALNTSTPITSSSVLN 3403
Score = 27.1 bits (57), Expect = 2.7
Identities = 22/79 (27%), Positives = 36/79 (45%), Gaps = 5/79 (6%)
Frame = -2
Query: 700 SSGLLEEPEKVTSSSFVSFSHICALSQILNS**TP-----VITHLNPEETLNRQNKTNHT 536
SS +L +TSSS ++ S S +LNS TP V+ P + + N +
Sbjct: 746 SSSVLNSSTPITSSSILNSSTPITSSSVLNS-STPITSSTVVNTSTPITSSSVLNSSTPI 804
Query: 535 TSLLAFPPKSPLQHSTIIN 479
TS +P+ S+++N
Sbjct: 805 TSSTVLNSSTPITSSSVLN 823
Score = 27.1 bits (57), Expect = 2.7
Identities = 22/79 (27%), Positives = 35/79 (44%), Gaps = 5/79 (6%)
Frame = -2
Query: 700 SSGLLEEPEKVTSSSFVSFSHICALSQILNS**TP-----VITHLNPEETLNRQNKTNHT 536
SS +L +TSS+ ++ S S +LNS TP V+ P + N +
Sbjct: 1082 SSSVLNSSTPITSSTVLNSSTPITSSSVLNS-STPITSSTVVNTSTPITSSTALNTSTPI 1140
Query: 535 TSLLAFPPKSPLQHSTIIN 479
TS +P+ ST++N
Sbjct: 1141 TSSSVLNSSTPITSSTVVN 1159
Score = 27.1 bits (57), Expect = 2.7
Identities = 22/79 (27%), Positives = 36/79 (45%), Gaps = 5/79 (6%)
Frame = -2
Query: 700 SSGLLEEPEKVTSSSFVSFSHICALSQILNS**TP-----VITHLNPEETLNRQNKTNHT 536
SS +L +TSS+ ++ S S +LNS TP V+ P + + N +
Sbjct: 1286 SSSVLNSSTPITSSTALNTSTSITSSSVLNS-STPITSSTVVNTSTPITSSSVLNSSTPI 1344
Query: 535 TSLLAFPPKSPLQHSTIIN 479
TS +P+ ST++N
Sbjct: 1345 TSSTVVNSSTPITSSTVVN 1363
Score = 27.1 bits (57), Expect = 2.7
Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 5/79 (6%)
Frame = -2
Query: 700 SSGLLEEPEKVTSSSFVSFSHICALSQILNS**TP-----VITHLNPEETLNRQNKTNHT 536
SS +L +TSSS ++ S S +LNS TP V+ P + + N +
Sbjct: 1526 SSTVLNTSTPITSSSVLNSSTPITSSSVLNS-STPITSSTVVNTSTPITSSSVVNSSTPI 1584
Query: 535 TSLLAFPPKSPLQHSTIIN 479
TS A +P+ S+++N
Sbjct: 1585 TSSTALNTSTPITSSSVLN 1603
Score = 27.1 bits (57), Expect = 2.7
Identities = 23/79 (29%), Positives = 36/79 (45%), Gaps = 5/79 (6%)
Frame = -2
Query: 700 SSGLLEEPEKVTSSSFVSFSHICALSQILNS**TPVI--THLNPEETLNRQNKTNHT--- 536
SS +L +TSS+ ++ S S +LNS TP+ T LN + N +
Sbjct: 1598 SSSVLNSSTPITSSTALNTSTPITSSSVLNS-STPITSSTVLNSSTPITSSTALNTSPPI 1656
Query: 535 TSLLAFPPKSPLQHSTIIN 479
TS +P+ ST++N
Sbjct: 1657 TSSTVVNSSTPITSSTVVN 1675
Score = 27.1 bits (57), Expect = 2.7
Identities = 22/79 (27%), Positives = 36/79 (45%), Gaps = 5/79 (6%)
Frame = -2
Query: 700 SSGLLEEPEKVTSSSFVSFSHICALSQILNS**TPVITH--LNPEETLNRQNKTNHTTSL 527
SS +L +TSS+ V+ S S +LNS TP+ + LN + N +T +
Sbjct: 2402 SSSVLNSSTPITSSTVVNTSTSITSSSVLNS-STPITSSSVLNSSTPITSSTVVNSSTPI 2460
Query: 526 LA---FPPKSPLQHSTIIN 479
+ +P+ ST +N
Sbjct: 2461 TSSSVLNSSTPITSSTALN 2479
Score = 27.1 bits (57), Expect = 2.7
Identities = 22/79 (27%), Positives = 36/79 (45%), Gaps = 5/79 (6%)
Frame = -2
Query: 700 SSGLLEEPEKVTSSSFVSFSHICALSQILNS**TP-----VITHLNPEETLNRQNKTNHT 536
SS +L +TSS+ ++ S S +LNS TP V+ P + + N +
Sbjct: 2630 SSSVLNSSTPITSSTALNTSTSITSSSVLNS-STPITSSTVVNTSTPITSSSVLNSSTPI 2688
Query: 535 TSLLAFPPKSPLQHSTIIN 479
TS +P+ ST++N
Sbjct: 2689 TSSTVVNTSTPITSSTVVN 2707
Score = 27.1 bits (57), Expect = 2.7
Identities = 22/79 (27%), Positives = 36/79 (45%), Gaps = 5/79 (6%)
Frame = -2
Query: 700 SSGLLEEPEKVTSSSFVSFSHICALSQILNS**TP-----VITHLNPEETLNRQNKTNHT 536
SS +L +TSS+ ++ S S +LNS TP V+ P + + N +
Sbjct: 2858 SSSVLNSSTPITSSTALNTSTSITSSSVLNS-STPITSSTVVNTSTPITSSSVLNSSTPI 2916
Query: 535 TSLLAFPPKSPLQHSTIIN 479
TS +P+ ST++N
Sbjct: 2917 TSSTVVNTSTPITSSTVVN 2935
Score = 27.1 bits (57), Expect = 2.7
Identities = 22/79 (27%), Positives = 36/79 (45%), Gaps = 5/79 (6%)
Frame = -2
Query: 700 SSGLLEEPEKVTSSSFVSFSHICALSQILNS**TP-----VITHLNPEETLNRQNKTNHT 536
SS +L +TSS+ ++ S S +LNS TP V+ P + + N +
Sbjct: 2954 SSSVLNSSTPITSSTALNTSTSITSSSVLNS-STPITSSTVVNTSTPITSSSVLNSSTPI 3012
Query: 535 TSLLAFPPKSPLQHSTIIN 479
TS +P+ ST++N
Sbjct: 3013 TSSTVVNTSTPITSSTVVN 3031
Score = 26.6 bits (56), Expect = 3.6
Identities = 23/79 (29%), Positives = 36/79 (45%), Gaps = 5/79 (6%)
Frame = -2
Query: 700 SSGLLEEPEKVTSSSFVSFSHICALSQILNS**TP-----VITHLNPEETLNRQNKTNHT 536
SS L +TSSS ++ S S +LNS TP V+ P + + N +
Sbjct: 1910 SSTALNTSTPITSSSVLNSSTPITSSSVLNS-STPITSSTVVNSSTPITSSSVLNSSTPI 1968
Query: 535 TSLLAFPPKSPLQHSTIIN 479
TS A +P+ S+++N
Sbjct: 1969 TSSTALNTSTPITSSSVLN 1987
Score = 26.6 bits (56), Expect = 3.6
Identities = 23/79 (29%), Positives = 36/79 (45%), Gaps = 5/79 (6%)
Frame = -2
Query: 700 SSGLLEEPEKVTSSSFVSFSHICALSQILNS**TP-----VITHLNPEETLNRQNKTNHT 536
SS L +TSSS ++ S S +LNS TP V+ P + + N +
Sbjct: 2102 SSTALNTSTPITSSSVLNSSTPITSSSVLNS-STPITSSTVVNSSTPITSSSVLNSSTPI 2160
Query: 535 TSLLAFPPKSPLQHSTIIN 479
TS A +P+ S+++N
Sbjct: 2161 TSSTALNTSTPITSSSVLN 2179
Score = 26.6 bits (56), Expect = 3.6
Identities = 22/79 (27%), Positives = 37/79 (46%), Gaps = 5/79 (6%)
Frame = -2
Query: 700 SSGLLEEPEKVTSSSFVSFSHICALSQILNS**TPVI--THLNPEETLNRQ---NKTNHT 536
SS +L +TSS+ ++ S S +LNS TP+ T LN ++ N +
Sbjct: 2834 SSSVLNSSTPITSSTALNTSTPITSSSVLNS-STPITSSTALNTSTSITSSSVLNSSTPI 2892
Query: 535 TSLLAFPPKSPLQHSTIIN 479
TS +P+ S+++N
Sbjct: 2893 TSSTVVNTSTPITSSSVLN 2911
Score = 26.2 bits (55), Expect = 4.7
Identities = 22/79 (27%), Positives = 36/79 (45%), Gaps = 5/79 (6%)
Frame = -2
Query: 700 SSGLLEEPEKVTSSSFVSFSHICALSQILNS**TP-----VITHLNPEETLNRQNKTNHT 536
SS +L +TSS+ ++ S S +LNS TP V+ P + N +
Sbjct: 854 SSSVLNSSTPITSSTALNTSTPITSSSVLNS-STPITSSTVVNTSTPITSSTVVNSSTPI 912
Query: 535 TSLLAFPPKSPLQHSTIIN 479
TS A +P+ S+++N
Sbjct: 913 TSSTALNTSTPITSSSVLN 931
Score = 26.2 bits (55), Expect = 4.7
Identities = 24/79 (30%), Positives = 37/79 (46%), Gaps = 5/79 (6%)
Frame = -2
Query: 700 SSGLLEEPEKVTSSSFVSFSHICALSQILNS**TPVI--THLN---PEETLNRQNKTNHT 536
SS +L +TSSS ++ S S +LNS T + T LN P + + N +
Sbjct: 986 SSSVLNSSTPITSSSVLNTSTPITSSSVLNS-STAITSSTALNTSTPITSSSVLNSSTPI 1044
Query: 535 TSLLAFPPKSPLQHSTIIN 479
TS +P+ ST++N
Sbjct: 1045 TSSTVVNTSTPITSSTVVN 1063
Score = 26.2 bits (55), Expect = 4.7
Identities = 24/79 (30%), Positives = 36/79 (45%), Gaps = 5/79 (6%)
Frame = -2
Query: 700 SSGLLEEPEKVTSSSFVSFSHICALSQILNS**TPVITH--LNPEETLNRQ---NKTNHT 536
SS +L +TSSS ++ S S ILNS TP+ + LN + N +
Sbjct: 1214 SSTVLNTSTPITSSSVLNSSTPITSSSILNS-STPITSSSVLNSSTPITSSTVVNSSTPI 1272
Query: 535 TSLLAFPPKSPLQHSTIIN 479
TS A P+ S+++N
Sbjct: 1273 TSSTALNTSIPITSSSVLN 1291
Score = 26.2 bits (55), Expect = 4.7
Identities = 22/74 (29%), Positives = 32/74 (43%)
Frame = -2
Query: 700 SSGLLEEPEKVTSSSFVSFSHICALSQILNS**TPVITHLNPEETLNRQNKTNHTTSLLA 521
SS +L +TSSS V+ S S +LNS T + L N + TS
Sbjct: 3086 SSSVLNSSTAITSSSIVNSSTPITSSSVLNS-----STAITSSSIL---NSSTPITSSSI 3137
Query: 520 FPPKSPLQHSTIIN 479
+P+ ST++N
Sbjct: 3138 LNSSTPITSSTVVN 3151
Score = 25.8 bits (54), Expect = 6.2
Identities = 23/79 (29%), Positives = 35/79 (44%), Gaps = 5/79 (6%)
Frame = -2
Query: 700 SSGLLEEPEKVTSSSFVSFSHICALSQILNS**TP-----VITHLNPEETLNRQNKTNHT 536
SS L +TSSS ++ S S +LNS TP V+ P + N +
Sbjct: 446 SSTALNTSTPITSSSVLNSSTPITSSSVLNS-STPITSSTVVNTSTPITSSTVVNSSTPI 504
Query: 535 TSLLAFPPKSPLQHSTIIN 479
TS A +P+ S+++N
Sbjct: 505 TSSTALNTSTPITSSSVLN 523
Score = 25.8 bits (54), Expect = 6.2
Identities = 23/79 (29%), Positives = 34/79 (43%), Gaps = 5/79 (6%)
Frame = -2
Query: 700 SSGLLEEPEKVTSSSFVSFSHICALSQILNS**TP-----VITHLNPEETLNRQNKTNHT 536
SS +L +TSSS ++ S S +LNS TP V+ P + N +
Sbjct: 1226 SSSVLNSSTPITSSSILNSSTPITSSSVLNS-STPITSSTVVNSSTPITSSTALNTSIPI 1284
Query: 535 TSLLAFPPKSPLQHSTIIN 479
TS +P+ ST +N
Sbjct: 1285 TSSSVLNSSTPITSSTALN 1303
Score = 25.8 bits (54), Expect = 6.2
Identities = 22/79 (27%), Positives = 35/79 (44%), Gaps = 5/79 (6%)
Frame = -2
Query: 700 SSGLLEEPEKVTSSSFVSFSHICALSQILNS**TP-----VITHLNPEETLNRQNKTNHT 536
SS ++ +TSS+ V+ S S +LNS TP V+ P + N +
Sbjct: 1430 SSTVVNSSTPITSSTVVNTSTPITSSSVLNS-STPITSSTVVNTSTPITSSTVVNSSTPI 1488
Query: 535 TSLLAFPPKSPLQHSTIIN 479
TS +P+ ST++N
Sbjct: 1489 TSSTVVNTSTPITSSTVVN 1507
Score = 25.4 bits (53), Expect = 8.2
Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 5/79 (6%)
Frame = -2
Query: 700 SSGLLEEPEKVTSSSFVSFSHICALSQILNS**TPVI--THLN---PEETLNRQNKTNHT 536
SS +L +TSS+ ++ S S +LNS TP+ T LN P + N +
Sbjct: 1862 SSSVLNSSTPITSSTALNTSTPITSSSVLNS-STPITSSTVLNSSTPITSSTALNTSTPI 1920
Query: 535 TSLLAFPPKSPLQHSTIIN 479
TS +P+ S+++N
Sbjct: 1921 TSSSVLNSSTPITSSSVLN 1939
Score = 25.4 bits (53), Expect = 8.2
Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 5/79 (6%)
Frame = -2
Query: 700 SSGLLEEPEKVTSSSFVSFSHICALSQILNS**TPVI--THLN---PEETLNRQNKTNHT 536
SS +L +TSS+ ++ S S +LNS TP+ T LN P + N +
Sbjct: 2054 SSSVLNSSTPITSSTALNTSTPITSSSVLNS-STPITSSTVLNSSTPITSSTALNTSTPI 2112
Query: 535 TSLLAFPPKSPLQHSTIIN 479
TS +P+ S+++N
Sbjct: 2113 TSSSVLNSSTPITSSSVLN 2131
>SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1
complex subunit Tpr1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1039
Score = 28.3 bits (60), Expect = 1.2
Identities = 15/44 (34%), Positives = 23/44 (52%)
Frame = +1
Query: 1 EKFVSHECEASVQFQR*PFKTARNSYIAHTVL*HYLYKLCNFSG 132
+ FV + +A QR FKT N +A ++L Y+Y N+ G
Sbjct: 265 DSFVQNYGKALQHIQR-AFKTRNNDPVASSILERYVYSKKNYEG 307
>SPAC23A1.18c |mrp51||mitochondrial ribosomal protein subunit L51-b
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 291
Score = 26.2 bits (55), Expect = 4.7
Identities = 8/21 (38%), Positives = 15/21 (71%)
Frame = +1
Query: 256 IYIKESRVSYTIYNSGTAELI 318
++ +E R+SYT+Y +G L+
Sbjct: 197 LFSQEQRISYTVYKNGRLRLV 217
>SPAC105.03c |||transcription factor |Schizosaccharomyces pombe|chr
1|||Manual
Length = 708
Score = 25.8 bits (54), Expect = 6.2
Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Frame = -2
Query: 442 CYSISVAFCYTTFYVASHGNVIK--SILCPSPGFTLPPHQFSA 320
C S+ C F+ S + + S+ C SP LPPH S+
Sbjct: 19 CIPCSLGTCLIHFHEFSSSSFMDPVSLFCSSPYPNLPPHSRSS 61
>SPBC1604.19c |||TRAPP complex subunit Trs85 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 658
Score = 25.8 bits (54), Expect = 6.2
Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 2/27 (7%)
Frame = +1
Query: 637 CG--KMKQSCWT*PSRVPPKVHWKNLS 711
CG KM + CW +RV K W++LS
Sbjct: 611 CGHCKMAEICWNLANRVYSKSGWESLS 637
>SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1583
Score = 25.8 bits (54), Expect = 6.2
Identities = 17/68 (25%), Positives = 30/68 (44%)
Frame = -2
Query: 664 SSSFVSFSHICALSQILNS**TPVITHLNPEETLNRQNKTNHTTSLLAFPPKSPLQHSTI 485
S+ FV C++ + +S V + E L+ N T H ++ + KS + I
Sbjct: 501 STLFVRLIQSCSIQNLFDS--EIVQSESKSTEALHSGNLTEHLKTVESILSKSRHEEYRI 558
Query: 484 INHTIYYV 461
NH + Y+
Sbjct: 559 ANHIVAYL 566
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,988,337
Number of Sequences: 5004
Number of extensions: 62200
Number of successful extensions: 216
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 198
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 337208592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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