Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5555
         (719 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0081 - 6608901-6609680,6610380-6610808,6610893-6610994,661...    30   1.6  
01_05_0747 - 24857965-24858393,24858502-24860063,24860176-24860245     29   4.9  

>02_02_0081 -
           6608901-6609680,6610380-6610808,6610893-6610994,
           6611114-6611429,6611624-6611806,6611909-6612030,
           6612181-6612251,6612732-6612921
          Length = 730

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
 Frame = -2

Query: 415 YTTFYVASHGNVI--KSILCPSPGFTLPPHQFSAKSVQ 308
           Y T +V   G  I  K+   P+P  TLPP Q+S  S++
Sbjct: 146 YCTVHVIHKGKAIQVKAAKAPAPFTTLPPKQYSQSSIE 183


>01_05_0747 - 24857965-24858393,24858502-24860063,24860176-24860245
          Length = 686

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 14/44 (31%), Positives = 26/44 (59%), Gaps = 4/44 (9%)
 Frame = -2

Query: 532 SLLAFPPKSPLQHSTIINHTIYYV*LS----VAFCYSISVAFCY 413
           +L + PP S L  S ++NH ++++ L+    V+F Y + V F +
Sbjct: 327 TLASAPPTSFLHVSPVVNHVLWWISLALMGFVSFIYLLKVVFYF 370


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,804,824
Number of Sequences: 37544
Number of extensions: 340128
Number of successful extensions: 742
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 728
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 742
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1874582652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)