Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5554
         (539 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces pombe...    27   2.3  
SPAC16A10.02 |||transcription coactivator Sub1 |Schizosaccharomy...    26   3.1  
SPCC18B5.08c |||isoleucine-tRNA ligase|Schizosaccharomyces pombe...    25   5.4  
SPAC3H1.14 ||SPAC9G1.01|cytoplasmic vesicle protein, Vid24 famil...    25   7.2  
SPAPB1A10.09 |ase1||microtubule-associated protein Ase1 |Schizos...    25   9.5  
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr...    25   9.5  

>SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 871

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 12/21 (57%), Positives = 12/21 (57%)
 Frame = +3

Query: 39  KRNTRFCGLPIHSLNPYLYAP 101
           K  T F GLP HS    LYAP
Sbjct: 471 KEGTSFPGLPYHSSKGNLYAP 491


>SPAC16A10.02 |||transcription coactivator Sub1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 136

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = -3

Query: 510 LYTNTHQCEHTRYELQEYKNTRYSHVQSSY 421
           L+   ++ E  R  L E++ TRY H++  Y
Sbjct: 28  LHWALNETEKKRITLSEFRGTRYVHIREYY 57


>SPCC18B5.08c |||isoleucine-tRNA ligase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 973

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -3

Query: 363 RKPYDYTFNTKKKQARTPHSFRSLKNQRQNAEK 265
           R PYD+  +       TP  F SL+N+R+ A K
Sbjct: 423 RYPYDWRTHKPLILRATPQWFISLENERKTAIK 455


>SPAC3H1.14 ||SPAC9G1.01|cytoplasmic vesicle protein, Vid24
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 195

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = +3

Query: 372 QLQGKRRATCIITLRVRSSIVHVSTACSCIL-VIHI 476
           + QGK++     TL V  +I+HV+ A S +   IH+
Sbjct: 12  KFQGKQKGVSSSTLEVHVTILHVNLAKSMLCGFIHV 47


>SPAPB1A10.09 |ase1||microtubule-associated protein Ase1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 731

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = -1

Query: 491 NVNTPDMNYKNTRTRGTHMYNRATH 417
           N NTP   + N+ +R TH  +++ H
Sbjct: 594 NSNTPFNKFPNSVSRNTHFESKSPH 618


>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1275

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 12/42 (28%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
 Frame = -2

Query: 322 SQNTAQLSIAQKPT-TKCRERPNDSYKSAFFFRLTCYPNVGF 200
           S+  A  ++   P+ T  R+ PN+   SA +   + +PN  F
Sbjct: 84  SRRVASYTVQSSPSRTTYRQLPNEPQNSAAYTTYSSFPNALF 125


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,411,816
Number of Sequences: 5004
Number of extensions: 52315
Number of successful extensions: 131
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 221892220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)