Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5554
         (539 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1273 + 28892774-28893946,28894964-28895104,28895277-288953...    28   5.5  
03_05_0815 + 27917516-27917767,27918024-27918110,27918281-279183...    27   9.6  

>06_03_1273 +
           28892774-28893946,28894964-28895104,28895277-28895329,
           28895852-28895966
          Length = 493

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = -2

Query: 334 EEKTSQNTAQLSIAQKPTTKCRERPNDSYKSAFFFRLTCYPNV 206
           E   S +++  S++ K     R+RPN +Y  A     + YP+V
Sbjct: 40  EASNSSSSSVASLSLKRARTPRKRPNQTYNEAAALLASMYPSV 82


>03_05_0815 +
           27917516-27917767,27918024-27918110,27918281-27918394,
           27919644-27919835,27919925-27921677,27921771-27922708,
           27923587-27923859
          Length = 1202

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 10/52 (19%)
 Frame = -1

Query: 404 DTGSPS-LP---LQLISCANLT------ITPLIRRKNKPEHRTAFDRSKTND 279
           +TGSP  LP   + LISCA++T      +TPL    N+PE +   + S+  D
Sbjct: 363 NTGSPVVLPHAIVVLISCASITFTLFLAVTPLKSASNEPETQELSEHSQRED 414


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,770,371
Number of Sequences: 37544
Number of extensions: 308648
Number of successful extensions: 648
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 638
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 648
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1198356516
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)