Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5554
         (539 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z22176-1|CAA80142.1|  724|Caenorhabditis elegans Hypothetical pr...    29   2.8  
Z78543-6|CAB01756.1| 2962|Caenorhabditis elegans Hypothetical pr...    28   4.9  
Z78417-13|CAB01693.1| 2962|Caenorhabditis elegans Hypothetical p...    28   4.9  
AF111934-1|AAD18003.1| 2962|Caenorhabditis elegans SDC-2 protein.      28   4.9  
CU457741-21|CAM36361.1|  231|Caenorhabditis elegans Hypothetical...    27   6.5  
AL132859-7|CAB60495.2|  231|Caenorhabditis elegans Hypothetical ...    27   6.5  
AF067608-8|AAC17647.1|  432|Caenorhabditis elegans Eukaryotic in...    27   6.5  
Z81083-3|CAB03104.1|  559|Caenorhabditis elegans Hypothetical pr...    27   8.6  

>Z22176-1|CAA80142.1|  724|Caenorhabditis elegans Hypothetical
           protein ZK1098.1 protein.
          Length = 724

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 16/41 (39%), Positives = 20/41 (48%)
 Frame = -3

Query: 360 KPYDYTFNTKKKQARTPHSFRSLKNQRQNAEKGRTIHTRAL 238
           KPY Y   TKK Q   P      K +++ A K  T+ T AL
Sbjct: 138 KPYYYNTLTKKTQWVKPDGEEITKGEQKPAAKAATVDTVAL 178


>Z78543-6|CAB01756.1| 2962|Caenorhabditis elegans Hypothetical protein
            C35C5.1 protein.
          Length = 2962

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
 Frame = -1

Query: 356  LTITPLIRRKNKPEHRTAFDRSKTNDKMPRKAERFIQE-RFFFSVNLLSECRFYRVSVTD 180
            LTI+     +   E RT F+R      + RKAE+ I      + V +   CR++  S+  
Sbjct: 1302 LTISRDPLNEKYQEARTEFERLDIKSMLLRKAEKLIDVLTIHYDVPIEQTCRYFTSSIES 1361

Query: 179  DN*IMA 162
            +   MA
Sbjct: 1362 NENRMA 1367


>Z78417-13|CAB01693.1| 2962|Caenorhabditis elegans Hypothetical
            protein C35C5.1 protein.
          Length = 2962

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
 Frame = -1

Query: 356  LTITPLIRRKNKPEHRTAFDRSKTNDKMPRKAERFIQE-RFFFSVNLLSECRFYRVSVTD 180
            LTI+     +   E RT F+R      + RKAE+ I      + V +   CR++  S+  
Sbjct: 1302 LTISRDPLNEKYQEARTEFERLDIKSMLLRKAEKLIDVLTIHYDVPIEQTCRYFTSSIES 1361

Query: 179  DN*IMA 162
            +   MA
Sbjct: 1362 NENRMA 1367


>AF111934-1|AAD18003.1| 2962|Caenorhabditis elegans SDC-2 protein.
          Length = 2962

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
 Frame = -1

Query: 356  LTITPLIRRKNKPEHRTAFDRSKTNDKMPRKAERFIQE-RFFFSVNLLSECRFYRVSVTD 180
            LTI+     +   E RT F+R      + RKAE+ I      + V +   CR++  S+  
Sbjct: 1302 LTISRDPLNEKYQEARTEFERLDIKSMLLRKAEKLIDVLTIHYDVPIEQTCRYFTSSIES 1361

Query: 179  DN*IMA 162
            +   MA
Sbjct: 1362 NENRMA 1367


>CU457741-21|CAM36361.1|  231|Caenorhabditis elegans Hypothetical
           protein Y39C12A.9 protein.
          Length = 231

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -3

Query: 366 LRKPYDYTFNTKKKQARTPHSFRSLKNQRQ 277
           LR+ YD   +   + +R  HS RSL N RQ
Sbjct: 61  LREEYDRQLDGISRNSRISHSNRSLDNMRQ 90


>AL132859-7|CAB60495.2|  231|Caenorhabditis elegans Hypothetical
           protein Y39C12A.9 protein.
          Length = 231

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -3

Query: 366 LRKPYDYTFNTKKKQARTPHSFRSLKNQRQ 277
           LR+ YD   +   + +R  HS RSL N RQ
Sbjct: 61  LREEYDRQLDGISRNSRISHSNRSLDNMRQ 90


>AF067608-8|AAC17647.1|  432|Caenorhabditis elegans Eukaryotic
           initiation factor protein3.E protein.
          Length = 432

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +2

Query: 404 HNTTCA*LDCTCEYRVFLYSCNSYRVCSH*CVLVY 508
           HN T   +D   +Y  F+Y C +Y V S  C+  Y
Sbjct: 121 HNFTVDMVDTLFKYSKFMYECGNYTVASV-CLYYY 154


>Z81083-3|CAB03104.1|  559|Caenorhabditis elegans Hypothetical
           protein F44F1.4 protein.
          Length = 559

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 12/49 (24%), Positives = 25/49 (51%)
 Frame = +2

Query: 17  NDFKSI*KKKYPFLRSPDTFIESVPVRAICLGCTRIGRRRLPDAPQQSV 163
           ND+++I K+KY  +      + + PV+   +      +++L +  QQ V
Sbjct: 346 NDYEAIQKEKYSSITDEYVVLPAAPVKTFAVRIQEEKQKKLDEEEQQKV 394


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,500,166
Number of Sequences: 27780
Number of extensions: 301017
Number of successful extensions: 680
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 671
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 680
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1081316076
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)