Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5553
         (771 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      25   1.0  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    24   1.8  
DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    23   4.2  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    22   5.5  
AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    21   9.6  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    21   9.6  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    21   9.6  

>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 24.6 bits (51), Expect = 1.0
 Identities = 8/26 (30%), Positives = 16/26 (61%)
 Frame = -1

Query: 594 LNRVVPMKLSKRYLNSEIDTIHCKCE 517
           L+++  +KL+ RY++     +HC  E
Sbjct: 288 LSKIQTLKLATRYIDFLFQVLHCNME 313


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = -2

Query: 650 KVPNLFNVNQSAISFFNYN*IVLFQ*NFQNVILTAK*ILF 531
           KV NL+   Q ++  + YN ++L     QNV ++    LF
Sbjct: 440 KVMNLYQQYQQSLPVYQYNDLILPGVTIQNVDVSQLVTLF 479


>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 16/40 (40%), Positives = 19/40 (47%)
 Frame = -1

Query: 762 PGLNEVDVLQSIRSLAYRSYIKSKVKGSTNLRWKMRLESS 643
           P LN V    S   L  R  +  KV G   L +KM LES+
Sbjct: 178 PALNIV--ADSFIELIRRQRVGYKVTGFEELAYKMGLEST 215


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = +3

Query: 408 LNIYIQLSFHGFFCIVRTNNGNG 476
           +N  +Q      FCI RT NG G
Sbjct: 485 INRVVQRGTKMQFCIFRTANGRG 507


>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = -1

Query: 516 KLFELEKALMKTKLR 472
           KLF  +KALMK ++R
Sbjct: 58  KLFGSKKALMKERIR 72


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = -1

Query: 516 KLFELEKALMKTKLR 472
           KLF  +KALMK ++R
Sbjct: 58  KLFGSKKALMKERIR 72


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = -1

Query: 516 KLFELEKALMKTKLR 472
           KLF  +KALMK ++R
Sbjct: 58  KLFGSKKALMKERIR 72


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 199,365
Number of Sequences: 438
Number of extensions: 3974
Number of successful extensions: 10
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24154023
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)