Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5552
         (612 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U39644-2|AAA80360.2|  966|Caenorhabditis elegans Hypothetical pr...    30   1.1  
AF022981-6|AAY86319.1|  202|Caenorhabditis elegans Hypothetical ...    30   1.1  
AC006630-3|AAK68325.1|  257|Caenorhabditis elegans Hypothetical ...    30   1.1  
Z74042-17|CAA98537.1|  688|Caenorhabditis elegans Hypothetical p...    29   2.0  
AL031623-1|CAA20938.1|  688|Caenorhabditis elegans Hypothetical ...    29   2.0  
U23515-8|AAP82645.1|  362|Caenorhabditis elegans Hypothetical pr...    29   2.6  
AF125461-4|AAK18995.1| 1360|Caenorhabditis elegans Hypothetical ...    29   3.5  
U41545-2|ABN43094.1|  176|Caenorhabditis elegans Hypothetical pr...    28   4.6  
AC006615-3|AAK68232.1| 1148|Caenorhabditis elegans Hypothetical ...    28   4.6  
AC006615-2|AAK68231.1| 1121|Caenorhabditis elegans Hypothetical ...    28   4.6  
AF016450-10|AAB65990.1|  166|Caenorhabditis elegans Hypothetical...    27   8.0  

>U39644-2|AAA80360.2|  966|Caenorhabditis elegans Hypothetical
           protein T10E10.4 protein.
          Length = 966

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 15/39 (38%), Positives = 19/39 (48%)
 Frame = -2

Query: 548 QRSGMGIGCVRGGVSNRGCMCGISCEWCSMRSVSCNRCG 432
           QR  MGIGC  G     G  C +    CS  S++ + CG
Sbjct: 618 QRCAMGIGCPPGNQCENGVCCPM--PMCSSGSIASSVCG 654


>AF022981-6|AAY86319.1|  202|Caenorhabditis elegans Hypothetical
           protein W03F9.11 protein.
          Length = 202

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 16/46 (34%), Positives = 19/46 (41%)
 Frame = +1

Query: 247 LIQPTLRLPSTRATPRLPSPSQHPSLRPLRPQYLPFHPTLPRHRMA 384
           +I+PT    +T   P  P P   P   P RP   PF   L   R A
Sbjct: 111 VIKPTTTTTTTTTPPPPPPPKPSPEFLPFRPTNQPFFDDLAVLRAA 156


>AC006630-3|AAK68325.1|  257|Caenorhabditis elegans Hypothetical
           protein F14H12.3 protein.
          Length = 257

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 17/58 (29%), Positives = 21/58 (36%), Gaps = 2/58 (3%)
 Frame = -2

Query: 596 SCMSVTGYRGSVCLGHQRSGMGIGCVRGGVSNRGC--MCGISCEWCSMRSVSCNRCGS 429
           +C    G  GS+    Q S  G GC  G V    C       C  C+     CN C +
Sbjct: 150 ACSVTCGSGGSITRSRQCS-CGSGCTGGSVEQEPCPQQAACPCTTCNQPPPPCNTCNT 206


>Z74042-17|CAA98537.1|  688|Caenorhabditis elegans Hypothetical
           protein T11F9.12 protein.
          Length = 688

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = +1

Query: 268 LPSTRATPRLPSPSQHP-SLRPLRPQYLPFHPTLPRHR 378
           LPST  TPR  + ++ P     + P+ +P  P +PRHR
Sbjct: 365 LPST-TTPRSTTTTEEPMKFEEVVPEVVPEKPEVPRHR 401


>AL031623-1|CAA20938.1|  688|Caenorhabditis elegans Hypothetical
           protein T11F9.12 protein.
          Length = 688

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = +1

Query: 268 LPSTRATPRLPSPSQHP-SLRPLRPQYLPFHPTLPRHR 378
           LPST  TPR  + ++ P     + P+ +P  P +PRHR
Sbjct: 365 LPST-TTPRSTTTTEEPMKFEEVVPEVVPEKPEVPRHR 401


>U23515-8|AAP82645.1|  362|Caenorhabditis elegans Hypothetical
           protein R144.4b protein.
          Length = 362

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = +1

Query: 256 PTLRLPSTRATPRLPSPSQH-PSLRPLRPQYLPFHPTLP 369
           P + +PS++ TP  P P+Q  PS +  R Q+    P  P
Sbjct: 162 PPVSVPSSKPTPPPPPPAQQKPSFQSDREQFRTMRPLRP 200


>AF125461-4|AAK18995.1| 1360|Caenorhabditis elegans Hypothetical
           protein Y8A9A.2 protein.
          Length = 1360

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = +1

Query: 244 LLIQPTLRLPSTRATPRLPSPSQHPSLRPLRPQYLPFHP-TLPR 372
           +L+QP+L L   R+ P  P     PS +  + + LP HP  LPR
Sbjct: 435 ILLQPSLPLNQLRSLPAHPLILLQPSQQQNQLRSLPAHPLILPR 478



 Score = 28.3 bits (60), Expect = 4.6
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = +1

Query: 244 LLIQPTLRLPSTRATPRLPSPSQHPSLRPLRPQYLPFHPTL 366
           +L+QP+L     R+ P LP     PSL   + + LP HP +
Sbjct: 415 ILLQPSLPQNQLRSLPALPLILLQPSLPLNQLRSLPAHPLI 455


>U41545-2|ABN43094.1|  176|Caenorhabditis elegans Hypothetical
           protein C02F12.5 protein.
          Length = 176

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 20/53 (37%), Positives = 21/53 (39%), Gaps = 2/53 (3%)
 Frame = -2

Query: 596 SCMSVTGYRGSVCLGHQRSGM--GIGCVRGGVSNRGCMCGISCEWCSMRSVSC 444
           SC   TG  G VC  H   G   G  CV GG+    C   I  EW    S  C
Sbjct: 81  SCGGNTGPDG-VCFAHGDQGCKKGTVCVMGGMVGFCCDKKIQDEWNKENSPKC 132


>AC006615-3|AAK68232.1| 1148|Caenorhabditis elegans Hypothetical
           protein C36B7.5b protein.
          Length = 1148

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -2

Query: 503 NRGCMCGISCEWCSMRSVSCNR 438
           NR C+ G+SCE  S   + CN+
Sbjct: 469 NRECIDGVSCEGASEEKILCNQ 490


>AC006615-2|AAK68231.1| 1121|Caenorhabditis elegans Hypothetical
           protein C36B7.5a protein.
          Length = 1121

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -2

Query: 503 NRGCMCGISCEWCSMRSVSCNR 438
           NR C+ G+SCE  S   + CN+
Sbjct: 469 NRECIDGVSCEGASEEKILCNQ 490


>AF016450-10|AAB65990.1|  166|Caenorhabditis elegans Hypothetical
           protein B0238.12 protein.
          Length = 166

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
 Frame = +2

Query: 482 CRTCSPCCLLRPLHNLCPCRS-FGDQDIRCPCSQLRSCS 595
           C   +P C  + ++N+C CRS +   +I   C +   CS
Sbjct: 55  CTNPNPMCTKQCINNVCQCRSGYVRNEITRQCVRQAQCS 93


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,447,235
Number of Sequences: 27780
Number of extensions: 134656
Number of successful extensions: 629
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 574
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 627
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1321669750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)