Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5551
         (573 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2C4.16c |rps801|rps8-1|40S ribosomal protein S8|Schizosaccha...   197   8e-52
SPAC521.05 |rps802|rps8-2|40S ribosomal protein S8|Schizosacchar...   196   1e-51
SPAC6G9.02c |nop9||RNA-binding protein Nop9|Schizosaccharomyces ...    29   0.37 
SPCC132.01c ||SPCC1322.17c|DUF814 family protein|Schizosaccharom...    27   2.0  
SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyce...    26   3.4  
SPBC16H5.10c |prp43||ATP-dependent RNA helicase Prp43|Schizosacc...    26   4.5  
SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein Ph...    25   6.0  
SPAC18G6.06 |||U3 snoRNP-associated protein Utp11|Schizosaccharo...    25   6.0  
SPAC890.03 |ppk16|mug92|serine/threonine protein kinase Ppk16 |S...    25   6.0  
SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase ki...    25   7.9  

>SPAC2C4.16c |rps801|rps8-1|40S ribosomal protein
           S8|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 200

 Score =  197 bits (481), Expect = 8e-52
 Identities = 99/167 (59%), Positives = 120/167 (71%)
 Frame = +3

Query: 15  PQRIHSVRSRGGNTKYRALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTLVKN 194
           P+RIH VR RGGN K+RALRLD+GNFSWGSE  ++KTRII V Y+ SNNELVRT TL K+
Sbjct: 40  PKRIHEVRVRGGNKKFRALRLDSGNFSWGSEGVSKKTRIIQVAYHPSNNELVRTNTLTKS 99

Query: 195 AIVVVDATPFRQWYESHYTLPLGRKKGAKLTEAEEAIINKKRSQKTARKYLARQRLAKVE 374
           AIV +DA PFR WYE+HY + +G  KG K T          +S+   RK+ AR   +KV+
Sbjct: 100 AIVQIDAAPFRVWYETHYGILMG-SKGKKATSTP-----NPKSKHVQRKHSARLGDSKVD 153

Query: 375 GALEEQFHTGRLLACVASRPGQCGRADGYILEGKELEFYLRKIKSKR 515
            ALE QF  GRL A V+SRPGQ GR DGYILEG+EL FYLR++  K+
Sbjct: 154 SALETQFAAGRLYAVVSSRPGQSGRCDGYILEGEELHFYLRRMAPKK 200


>SPAC521.05 |rps802|rps8-2|40S ribosomal protein
           S8|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 200

 Score =  196 bits (479), Expect = 1e-51
 Identities = 99/167 (59%), Positives = 120/167 (71%)
 Frame = +3

Query: 15  PQRIHSVRSRGGNTKYRALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTLVKN 194
           P+RIH VR RGGN K+RALRLD+GNFSWGSE  ++KTRII V Y+ SNNELVRT TL K+
Sbjct: 40  PKRIHEVRVRGGNKKFRALRLDSGNFSWGSEGVSKKTRIIQVAYHPSNNELVRTNTLTKS 99

Query: 195 AIVVVDATPFRQWYESHYTLPLGRKKGAKLTEAEEAIINKKRSQKTARKYLARQRLAKVE 374
           AIV +DA PFR WYE+HY + +G  KG K T          +S+   RK+ AR   +KV+
Sbjct: 100 AIVQIDAAPFRVWYETHYGILMG-SKGKKATATP-----TPKSKHVQRKHSARLGDSKVD 153

Query: 375 GALEEQFHTGRLLACVASRPGQCGRADGYILEGKELEFYLRKIKSKR 515
            ALE QF  GRL A V+SRPGQ GR DGYILEG+EL FYLR++  K+
Sbjct: 154 SALETQFAAGRLYAVVSSRPGQSGRCDGYILEGEELHFYLRRMAPKK 200


>SPAC6G9.02c |nop9||RNA-binding protein Nop9|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 655

 Score = 29.5 bits (63), Expect = 0.37
 Identities = 15/38 (39%), Positives = 19/38 (50%)
 Frame = -1

Query: 492 DRTRVLCLLRCNHRRDHTDLGDSPRKPANAPCGIALLE 379
           D   + CLLR  H+RD  +  +  RK  N   G  LLE
Sbjct: 434 DANIIPCLLRSKHKRDKANPENKERKLVNNLLGAQLLE 471


>SPCC132.01c ||SPCC1322.17c|DUF814 family
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1021

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 16/73 (21%), Positives = 33/73 (45%)
 Frame = +3

Query: 213 ATPFRQWYESHYTLPLGRKKGAKLTEAEEAIINKKRSQKTARKYLARQRLAKVEGALEEQ 392
           +TP     + H       KKG+K+  A++    ++R  + AR+  A +   K   ++E+ 
Sbjct: 754 STPDTTGSDIHIVSEKRGKKGSKVITAKKVSAKERREARRARRQTALEESLKAPISIEDA 813

Query: 393 FHTGRLLACVASR 431
                +LA +  +
Sbjct: 814 TDPQTILAILKQK 826


>SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 817

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 15/61 (24%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
 Frame = +3

Query: 96  WGSEC--STRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYTLPLGRK 269
           WGS+     +K  + +V+  +++ +  +T  L         AT F  + +S+Y +PL R+
Sbjct: 250 WGSQSYLQEKKAGLAEVLNISTSQQKPKTTALDYEVFRHEMATKFSSFADSYYPVPLDRE 309

Query: 270 K 272
           +
Sbjct: 310 Q 310


>SPBC16H5.10c |prp43||ATP-dependent RNA helicase
           Prp43|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 735

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -3

Query: 235 YHCLNGVASTTTIAFLTRVFVRTNS 161
           ++C N V S T +  +  VFVR NS
Sbjct: 518 FYCSNEVLSLTALLSVPNVFVRPNS 542


>SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein
           Phf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 538

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = -3

Query: 157 LDALYTTSMIRVLRVEHSDPQEKLPVSRR 71
           L+ + T S  +V R  H DP  KLP  RR
Sbjct: 193 LEGVKTKSGRKVHRPNHFDPLVKLPTRRR 221


>SPAC18G6.06 |||U3 snoRNP-associated protein
           Utp11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 249

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 18/57 (31%), Positives = 27/57 (47%)
 Frame = +3

Query: 306 INKKRSQKTARKYLARQRLAKVEGALEEQFHTGRLLACVASRPGQCGRADGYILEGK 476
           ++ K  +K A + L RQ+  K   A EE+    RLL       G+ GR    ++ GK
Sbjct: 188 LHSKLKEKAATELLLRQKRDKKLAAAEERVELDRLL------QGKGGRQKKKVVNGK 238


>SPAC890.03 |ppk16|mug92|serine/threonine protein kinase Ppk16
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 672

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 19/67 (28%), Positives = 32/67 (47%)
 Frame = +3

Query: 39  SRGGNTKYRALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDAT 218
           +R   T  R+L   +G  S  S  ++ +TR    V +AS+N L+   +   ++  V   T
Sbjct: 541 TRRSRTPIRSL---SGRSSVASSRNSSRTRSYSNVSSASSNSLISIISSKPSSSTVQRQT 597

Query: 219 PFRQWYE 239
           PF   +E
Sbjct: 598 PFHSPFE 604


>SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase kinase
            Win1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1436

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +3

Query: 54   TKYRALRLDTGNFSWGSECSTRKTRI 131
            T YRA+ LDTG+     E +  K RI
Sbjct: 1133 TVYRAVNLDTGDLMAVKEVALHKPRI 1158


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,054,690
Number of Sequences: 5004
Number of extensions: 37387
Number of successful extensions: 113
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 244081442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)