Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-5551
(573 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0510 - 16659486-16659564,16659772-16659947,16660464-166607... 221 3e-58
02_03_0270 + 17135464-17135467,17135583-17135655,17136253-171365... 206 1e-53
03_01_0161 + 1307206-1307769,1307979-1308101,1308182-1308286,130... 32 0.37
01_02_0013 + 10162478-10163581 29 2.0
01_01_1134 + 8994315-8995892 29 3.5
12_01_1080 + 11241590-11241625,11241723-11242018,11242113-112422... 28 4.6
04_03_0867 - 20414999-20415160,20415255-20415384,20415515-204157... 28 4.6
03_04_0037 + 16694760-16695227,16695563-16695642,16695735-166958... 28 4.6
06_02_0131 + 12161268-12161781,12162123-12162867,12162950-121629... 28 6.1
04_04_0799 + 28143878-28145042,28145127-28145290,28146008-281460... 28 6.1
07_03_0493 + 18747427-18748356,18748594-18748697,18749586-187497... 27 8.0
>04_03_0510 -
16659486-16659564,16659772-16659947,16660464-16660797,
16661564-16661636,16661780-16661783
Length = 221
Score = 221 bits (540), Expect = 3e-58
Identities = 107/174 (61%), Positives = 131/174 (75%), Gaps = 8/174 (4%)
Frame = +3
Query: 24 IHSVRSRGGNTKYRALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIV 203
+ VR RGGN K+RALRLDTGN+SWGSE TRKTRI+DVVYNASNNELVRT+TLVK+AIV
Sbjct: 44 VRRVRVRGGNLKWRALRLDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIV 103
Query: 204 VVDATPFRQWYESHYTLPLGRKK--------GAKLTEAEEAIINKKRSQKTARKYLARQR 359
VDA PF+QWY +HY + +GRKK A+ E E A K+S RK RQ+
Sbjct: 104 QVDAAPFKQWYLTHYGVDIGRKKKAPAAKKDAAEGQEGEAATEEAKKSNHVVRKLEKRQQ 163
Query: 360 LAKVEGALEEQFHTGRLLACVASRPGQCGRADGYILEGKELEFYLRKIKSKRAK 521
++ +EEQF +GRLLAC++SRPGQCGRADGYILEGKELEFY++K++ K+ K
Sbjct: 164 TRTLDSHIEEQFGSGRLLACISSRPGQCGRADGYILEGKELEFYMKKLQRKKGK 217
>02_03_0270 +
17135464-17135467,17135583-17135655,17136253-17136583,
17136916-17136969,17137219-17137394,17137607-17137685
Length = 238
Score = 206 bits (503), Expect = 1e-53
Identities = 107/191 (56%), Positives = 131/191 (68%), Gaps = 25/191 (13%)
Frame = +3
Query: 24 IHSVRSRGGNTKYRALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIV 203
+ VR RGGN K+RALRLDTGN+SWGSE TRKTRI+DVVYNASNNELVRT+TLVK+AIV
Sbjct: 44 VRRVRVRGGNVKWRALRLDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIV 103
Query: 204 VVDATPFRQWYESHYTLPLGRKKGA-------------------------KLTEAEEAII 308
VDA PF+QWY +HY + +GRKK A K +AE
Sbjct: 104 QVDAAPFKQWYLTHYGVDIGRKKKAPAAKKDAEHALGKIRCLFIGLYVMLKGQDAEATTE 163
Query: 309 NKKRSQKTARKYLARQRLAKVEGALEEQFHTGRLLACVASRPGQCGRADGYILEGKELEF 488
K+S RK RQ+ ++ +EEQF +GRLLAC++SRPGQCGRADGYILEGKELEF
Sbjct: 164 EAKKSNHVVRKLEKRQQGRTLDAHIEEQFGSGRLLACISSRPGQCGRADGYILEGKELEF 223
Query: 489 YLRKIKSKRAK 521
Y++K++ K+ K
Sbjct: 224 YMKKLQRKKGK 234
>03_01_0161 +
1307206-1307769,1307979-1308101,1308182-1308286,
1308688-1308867,1308988-1309050,1309151-1309345,
1309704-1309805,1309885-1309947,1310045-1310113,
1310215-1310270,1310587-1310755
Length = 562
Score = 31.9 bits (69), Expect = 0.37
Identities = 16/61 (26%), Positives = 31/61 (50%)
Frame = +3
Query: 24 IHSVRSRGGNTKYRALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIV 203
+H + + GG T R +R + C +++ ++V++ + NELV T +N I+
Sbjct: 376 LHGLLASGGGTADRCIRFWNTTTNMHLNCVDTGSQVCNLVWSKNVNELVSTHGYSQNQII 435
Query: 204 V 206
V
Sbjct: 436 V 436
>01_02_0013 + 10162478-10163581
Length = 367
Score = 29.5 bits (63), Expect = 2.0
Identities = 16/46 (34%), Positives = 23/46 (50%)
Frame = +1
Query: 49 EILSTVRCVWTPVTSLGDRNVQLAKPVSLMLCIMHLTMNWCVQRPL 186
E +S RC P+ G R + A SL + ++HL +C RPL
Sbjct: 240 EYMSPERCA--PMAMAGARVARAADVWSLGITVLHLYQGYCPARPL 283
>01_01_1134 + 8994315-8995892
Length = 525
Score = 28.7 bits (61), Expect = 3.5
Identities = 16/48 (33%), Positives = 23/48 (47%)
Frame = +3
Query: 84 GNFSWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFR 227
G FS C+ RK +DV + RT +N+ VV D+T F+
Sbjct: 146 GLFSRDCPCAGRKAVTVDVASEPRSPATPRTHARFENSHVVADSTIFK 193
>12_01_1080 + 11241590-11241625,11241723-11242018,11242113-11242269,
11242381-11242449,11242551-11243480,11243868-11243906,
11244414-11244478,11244663-11244768,11244850-11245050,
11247001-11247201,11247756-11247779,11249425-11249586,
11249676-11249915,11250267-11250479,11250618-11250968,
11251041-11251193,11251649-11251858,11252049-11252267,
11252365-11252482,11252879-11253828,11254023-11254220,
11254294-11254553,11255316-11255505,11255817-11256169,
11258278-11258386,11258466-11258615,11258748-11258844,
11259315-11259415
Length = 2065
Score = 28.3 bits (60), Expect = 4.6
Identities = 16/51 (31%), Positives = 32/51 (62%), Gaps = 2/51 (3%)
Frame = +3
Query: 78 DTGN-FSWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVD-ATPF 224
DT N FS+GS+ ++ + + + ++ S+ ++ + +V NA +VV A+PF
Sbjct: 1340 DTNNCFSYGSQRASTERTLGNDMHPGSSIQITESARIVNNANIVVQVASPF 1390
>04_03_0867 -
20414999-20415160,20415255-20415384,20415515-20415702,
20415967-20416001,20416363-20416579,20416737-20416820,
20417609-20417875,20417954-20418061,20418163-20418249,
20418629-20419399
Length = 682
Score = 28.3 bits (60), Expect = 4.6
Identities = 13/45 (28%), Positives = 25/45 (55%)
Frame = +1
Query: 31 PFVHVVEILSTVRCVWTPVTSLGDRNVQLAKPVSLMLCIMHLTMN 165
P + VV + + C+W + SLG R Q++K + L ++ + +N
Sbjct: 278 PLLSVVAA-TVIPCMWLVIASLGRRLRQISKEAHISLAMLTVYLN 321
>03_04_0037 +
16694760-16695227,16695563-16695642,16695735-16695828,
16695973-16696071,16696650-16696742,16696822-16696941,
16697422-16697525,16697734-16697806,16698023-16698085
Length = 397
Score = 28.3 bits (60), Expect = 4.6
Identities = 15/43 (34%), Positives = 21/43 (48%)
Frame = +3
Query: 393 FHTGRLLACVASRPGQCGRADGYILEGKELEFYLRKIKSKRAK 521
F+ +LA AS P +C R + + G + LRK S R K
Sbjct: 104 FYLRYILAAAASGPCRCRRKESLVGMGNYISRVLRKSSSDRGK 146
>06_02_0131 +
12161268-12161781,12162123-12162867,12162950-12162986,
12163083-12163216,12163298-12163625
Length = 585
Score = 27.9 bits (59), Expect = 6.1
Identities = 18/62 (29%), Positives = 34/62 (54%), Gaps = 3/62 (4%)
Frame = -3
Query: 223 NGVASTTTIAFLTRVFVRTNS---LLDALYTTSMIRVLRVEHSDPQEKLPVSRRSARYLV 53
+G+ ST ++ FL + T + +L+ +YT ++ EH DP + + ++RYL+
Sbjct: 392 SGLQSTQSLPFLEEHDMSTEAFEKVLEYMYTDNL------EHMDPNQAEELFDIASRYLL 445
Query: 52 FP 47
FP
Sbjct: 446 FP 447
>04_04_0799 +
28143878-28145042,28145127-28145290,28146008-28146070,
28146268-28146491,28146850-28147555
Length = 773
Score = 27.9 bits (59), Expect = 6.1
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = +3
Query: 270 KGAKLTEAEEAIINKKRSQKTARKYLARQRLAKVEGALEEQFHT 401
KG+KL + E + + R++ A R LA GAL + H+
Sbjct: 4 KGSKLEDQEAVALCRGRAELLAAAVRHRYALADAHGALADSLHS 47
>07_03_0493 +
18747427-18748356,18748594-18748697,18749586-18749795,
18749992-18750597,18750819-18751095,18751163-18751310,
18751957-18752044,18752167-18752284
Length = 826
Score = 27.5 bits (58), Expect = 8.0
Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Frame = -1
Query: 126 GFCELNIPIPKRSY-RCPDAAHGT*YFHHVNERSGYAEAS 10
GF + +P P+ RCPD H + HH + G A A+
Sbjct: 30 GFFNILVPPPQSPRPRCPDHQHHHHHHHHHDAAGGAAAAA 69
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,963,255
Number of Sequences: 37544
Number of extensions: 263731
Number of successful extensions: 872
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 842
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 871
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1328870592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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