Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5549
         (714 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC23G7.08c |rga7||GTPase activating protein Rga7|Schizosacchar...    29   0.87 
SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ...    27   2.7  
SPAC11G7.06c |mug132||S. pombe specific UPF0300 family protein 3...    26   6.1  
SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces ...    25   8.1  
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce...    25   8.1  

>SPBC23G7.08c |rga7||GTPase activating protein
           Rga7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 28.7 bits (61), Expect = 0.87
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = +1

Query: 136 YNLNIINVLKLPSVVFNVNTMENTNTNKDLNQLHLPKSS*NNL 264
           + LN+  + ++PS    VN + +   N  L QLH P+   N++
Sbjct: 533 FGLNLQGIYRVPSSSARVNMLRSQFENNPLLQLHTPEDYENDV 575


>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2344

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 21/58 (36%), Positives = 31/58 (53%)
 Frame = +3

Query: 372  QTKASVIPTLGQLLLVVWKRMH*SFTNRSAEAALVMVRDLLFCCKSVIRNGQLTAIFA 545
            QT AS I   G LL  + +RM     + SA AA++ +RD +    +  R G+L  +FA
Sbjct: 1474 QTIASEIELTG-LLSTMTQRM---LEDSSANAAVIAIRDDVGFKIAAYRTGELNEVFA 1527


>SPAC11G7.06c |mug132||S. pombe specific UPF0300 family protein
           3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 430

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 8/20 (40%), Positives = 15/20 (75%)
 Frame = -3

Query: 436 CILFHTTNNNWPKVGITDAF 377
           C++F+  N ++ K+G+TD F
Sbjct: 107 CVVFYHQNKSYLKMGVTDNF 126


>SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1877

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = +1

Query: 259 NLISQILHLQIVSNNSAPDTKG 324
           +L+ +I+H+ IV +  AP+ KG
Sbjct: 576 SLLEEIIHIGIVRDTPAPELKG 597


>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2104

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +1

Query: 118 FVKNKLYNLNIINVLKLPSVVFNV 189
           +V+ K   + IIN LKLPS V+ +
Sbjct: 724 YVEAKKATITIINELKLPSTVYRL 747


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,876,840
Number of Sequences: 5004
Number of extensions: 57606
Number of successful extensions: 155
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 333194204
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)