Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5549
         (714 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0623 - 19429029-19430207                                         30   1.6  
11_04_0354 + 16697571-16700256,16700335-16700759                       29   4.8  
05_03_0118 - 8586731-8587220,8587331-8587846,8588842-8588906,858...    29   4.8  
12_01_0182 + 1345209-1347065                                           28   6.4  
10_02_0167 - 6100676-6102111,6102174-6102708,6102967-6103975,610...    28   6.4  
05_07_0135 - 27913201-27913599                                         28   6.4  

>08_02_0623 - 19429029-19430207
          Length = 392

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 23/74 (31%), Positives = 32/74 (43%)
 Frame = -2

Query: 650 SVGCVDGFDEFRVRRGR*PAAVSRISQTISRRQILCKYCCQLSISYYGLATKKQIADHD* 471
           + GC  G  E RV      AA  R    + R ++LC+     SI     A   ++AD   
Sbjct: 286 AAGCSKG--EVRVMVREWLAAADRFG--LERMRLLCEDALCESIGVANAAATLRLADRHH 341

Query: 470 CCLCRAICETLVHS 429
           C L RA+C   + S
Sbjct: 342 CALLRALCMEYIAS 355


>11_04_0354 + 16697571-16700256,16700335-16700759
          Length = 1036

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 11/43 (25%), Positives = 23/43 (53%)
 Frame = +2

Query: 311 QIQKVSQI*QTKLLNICCCVANKSIRNTDFRPVVVSCMEKNAL 439
           + + +S+I    L+N+  C ++  I+  DF+ +V   M   +L
Sbjct: 754 ECEALSKIRHRNLINVITCCSSTDIKQNDFKAIVFEFMPNGSL 796


>05_03_0118 -
           8586731-8587220,8587331-8587846,8588842-8588906,
           8589483-8589989
          Length = 525

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 19/47 (40%), Positives = 27/47 (57%), Gaps = 6/47 (12%)
 Frame = +2

Query: 578 YVI--QLPVTVLVEL*TRRIHRHNLLSFSVGR----DSDPPVDSANH 700
           YV+  QLP  V V+  + R H H+L++F++GR    DS   V   NH
Sbjct: 160 YVVKTQLPRLVGVQEASDRSHPHHLVAFNLGRANMADSQSSVHGENH 206


>12_01_0182 + 1345209-1347065
          Length = 618

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 14/56 (25%), Positives = 32/56 (57%), Gaps = 2/56 (3%)
 Frame = +1

Query: 217 KDLNQLHLPKSS*NNL--ISQILHLQIVSNNSAPDTKGVANLTNEIAKYLLLCGKQ 378
           K++  + + K+  ++L  I+ +LH  +V + + P +K +  +  EI   L+ CG++
Sbjct: 473 KEMKSMGIDKNPGSSLVDINGVLHEFLVGDKTHPASKEIYTMVEEIETRLIECGRR 528


>10_02_0167 -
           6100676-6102111,6102174-6102708,6102967-6103975,
           6104006-6105036
          Length = 1336

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = +1

Query: 595 GHRPR-RTLNSSNPSTQPTEFLSGSRFRSPSR 687
           GH PR RTL  S+PS+  +   S S  R P R
Sbjct: 131 GHHPRNRTLEPSDPSSSSSSASSSSSDRHPRR 162


>05_07_0135 - 27913201-27913599
          Length = 132

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 15/43 (34%), Positives = 20/43 (46%)
 Frame = -1

Query: 696 FAESTGGSESRPTEKLSRLCRWIRRVQSSTRTVTGSCITYFAD 568
           FA   GG+ SR    LSR  RW RR+   + T+     +   D
Sbjct: 60  FAAPGGGAASRRLASLSRSLRWKRRLPGFSLTLRSGSASAVVD 102


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,647,893
Number of Sequences: 37544
Number of extensions: 331755
Number of successful extensions: 738
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 722
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 738
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1851002996
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)