Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5549
         (714 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006624-8|AAF39782.2| 1092|Caenorhabditis elegans Importin beta...    29   2.5  
Z81054-12|CAB61006.1| 1781|Caenorhabditis elegans Hypothetical p...    28   7.6  
Z81032-6|CAB60991.1| 1781|Caenorhabditis elegans Hypothetical pr...    28   7.6  
Z37983-3|CAA86056.1|  621|Caenorhabditis elegans Hypothetical pr...    28   7.6  
AF038576-1|AAC38973.1| 1781|Caenorhabditis elegans CED-5 protein.      28   7.6  

>AC006624-8|AAF39782.2| 1092|Caenorhabditis elegans Importin beta
           family protein 3 protein.
          Length = 1092

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 12/39 (30%), Positives = 24/39 (61%)
 Frame = -1

Query: 603 TVTGSCITYFADN*QKTNIVQILLSTVHFVLRTCNKKAD 487
           T   + I +  DN ++ ++V+++ S V  VL+ CN+ +D
Sbjct: 186 TAVRAVIAFAVDNDEEKDVVRLMTSLVPNVLQVCNETSD 224


>Z81054-12|CAB61006.1| 1781|Caenorhabditis elegans Hypothetical
           protein C02F4.1 protein.
          Length = 1781

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -2

Query: 569 TISRRQILCKYCCQLSISYYGLATKKQIAD 480
           +I   ++ CKY C++SIS Y L  K    D
Sbjct: 212 SIKSVELHCKYSCEISISLYDLDKKMFTTD 241


>Z81032-6|CAB60991.1| 1781|Caenorhabditis elegans Hypothetical
           protein C02F4.1 protein.
          Length = 1781

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -2

Query: 569 TISRRQILCKYCCQLSISYYGLATKKQIAD 480
           +I   ++ CKY C++SIS Y L  K    D
Sbjct: 212 SIKSVELHCKYSCEISISLYDLDKKMFTTD 241


>Z37983-3|CAA86056.1|  621|Caenorhabditis elegans Hypothetical
           protein B0393.3 protein.
          Length = 621

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +3

Query: 486 DLLFCCKSVIRNGQLTAIFAQ 548
           D+L CC+  +R+G L  IF Q
Sbjct: 142 DILICCRHRLRDGDLQVIFKQ 162


>AF038576-1|AAC38973.1| 1781|Caenorhabditis elegans CED-5 protein.
          Length = 1781

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -2

Query: 569 TISRRQILCKYCCQLSISYYGLATKKQIAD 480
           +I   ++ CKY C++SIS Y L  K    D
Sbjct: 212 SIKSVELHCKYSCEISISLYDLDKKMFTTD 241


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,944,815
Number of Sequences: 27780
Number of extensions: 324771
Number of successful extensions: 831
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 814
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 831
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1666201324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)