Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5546
         (590 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16C6.01c ||SPBC543.11c|lysine methyltransferase |Schizosacch...    27   1.5  
SPAC806.03c |rps2601|rps26-1, rps26|40S ribosomal protein S26|Sc...    27   2.7  
SPAC1805.11c |rps2602|rps26-2|40S ribosomal protein S26|Schizosa...    26   3.6  
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ...    26   4.7  
SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual     26   4.7  
SPAPB24D3.01 ||SPAPB2C8.02|transcription factor |Schizosaccharom...    25   8.3  
SPBC18E5.14c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    25   8.3  

>SPBC16C6.01c ||SPBC543.11c|lysine methyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 473

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -1

Query: 257 HQNLYTLYLYIFKCLYKM 204
           H   Y LYLY+F C+YK+
Sbjct: 338 HGPSYGLYLYLFFCIYKI 355


>SPAC806.03c |rps2601|rps26-1, rps26|40S ribosomal protein
           S26|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 120

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -2

Query: 277 LYEISLSTKIYIPYIYISLNVCIKCLL 197
           L E S+ ++  IP IY+ L  C+ C +
Sbjct: 53  LSEASVYSEYAIPKIYVKLQYCVSCAI 79


>SPAC1805.11c |rps2602|rps26-2|40S ribosomal protein
           S26|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 119

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -2

Query: 277 LYEISLSTKIYIPYIYISLNVCIKCLL 197
           L E S+ ++  IP +YI L  C+ C +
Sbjct: 53  LSEASVYSEYTIPKLYIKLQYCVSCAI 79


>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 2493

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = -3

Query: 564 NFHTFAIITADRDRISLV*NTCKLPLQIPYYIQYKNIEAHISL 436
           N     ++T    R+S   +  K  LQIP  + ++NIE+ +S+
Sbjct: 306 NLFKATLVTRKGSRVSDYPSFFKAYLQIPNLVSWENIESDLSV 348


>SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 935

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 18/46 (39%), Positives = 25/46 (54%)
 Frame = -2

Query: 319 TKQGFFTF*NVP*MLYEISLSTKIYIPYIYISLNVCIKCLLQYLVF 182
           TK GF  F  V    +  SL     +  ++ISL  CI CLLQ++V+
Sbjct: 531 TKLGFKNFLTVAKQKHGFSL-----LKILFISL--CILCLLQFIVY 569


>SPAPB24D3.01 ||SPAPB2C8.02|transcription factor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 594

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 8/22 (36%), Positives = 15/22 (68%)
 Frame = +1

Query: 4   FFFCFLGVIAFYIIYGVPSILS 69
           F+ C++  I   +++G PS+LS
Sbjct: 324 FWICYIFEITTSLVFGTPSVLS 345


>SPBC18E5.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 127

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 9/32 (28%), Positives = 19/32 (59%)
 Frame = -2

Query: 277 LYEISLSTKIYIPYIYISLNVCIKCLLQYLVF 182
           LYE+ +  K Y  Y ++S    ++ + +YL++
Sbjct: 24  LYEVYMLYKTYTSYFFMSSKSFVRGVKRYLIY 55


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,448,206
Number of Sequences: 5004
Number of extensions: 49285
Number of successful extensions: 119
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 256184654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)