Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5546
         (590 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0282 - 16749358-16749445,16749640-16749695,16749965-167501...    29   3.7  
01_06_1764 - 39730655-39730789,39730917-39731048,39731257-397313...    27   8.5  

>12_02_0282 -
           16749358-16749445,16749640-16749695,16749965-16750137,
           16750768-16750924,16751279-16751422,16751959-16752134,
           16753024-16753045,16753845-16753937,16754259-16754431,
           16754550-16754760
          Length = 430

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 18/67 (26%), Positives = 27/67 (40%)
 Frame = -1

Query: 362 WYHGKIWPTIVQNSHEARLFYILKCPMNVI*N*LKHQNLYTLYLYIFKCLYKMSVAISRI 183
           W HG+IWP     + E      L C + +I         Y   +    C  K ++ +S  
Sbjct: 96  WLHGRIWPYESHMTEEDSYASTLLCGIELI-----RSGFYVHDVVDVDCHGKYALMVSGD 150

Query: 182 LRNRCSA 162
           +R RC A
Sbjct: 151 VRGRCRA 157


>01_06_1764 -
           39730655-39730789,39730917-39731048,39731257-39731301,
           39731390-39731506,39731631-39731811,39732453-39732541,
           39733177-39733217,39733520-39733638,39733720-39733820,
           39734098-39734163,39734247-39734329,39734570-39734750,
           39734846-39734965
          Length = 469

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 16/57 (28%), Positives = 31/57 (54%)
 Frame = -2

Query: 280 MLYEISLSTKIYIPYIYISLNVCIKCLLQYLVFLEIGALHNYTLFFIALQIRNTLVE 110
           +L   +LS  + I  I      C KC+L Y++      ++N T+ +I+++I ++L E
Sbjct: 139 ILRTANLSVPLKIYEIGGGSGTCAKCILDYMMLNAPPKVYN-TMKYISVEISSSLAE 194


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,134,384
Number of Sequences: 37544
Number of extensions: 255472
Number of successful extensions: 416
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 408
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 416
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1400060088
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)