Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-5546
(590 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81474-5|CAB03906.1| 361|Caenorhabditis elegans Hypothetical pr... 38 0.005
AF025452-8|AAB70940.1| 324|Caenorhabditis elegans Serpentine re... 36 0.028
AF025452-7|AAB70941.2| 335|Caenorhabditis elegans Serpentine re... 32 0.35
AC024799-2|AAK72317.3| 328|Caenorhabditis elegans Serpentine re... 30 1.4
AC087081-8|AAY55899.1| 499|Caenorhabditis elegans Hypothetical ... 28 4.3
Z81088-6|CAB03123.1| 272|Caenorhabditis elegans Hypothetical pr... 28 5.7
Z29115-6|CAA82365.2| 1374|Caenorhabditis elegans Hypothetical pr... 28 5.7
Z29115-5|CAA82366.2| 1368|Caenorhabditis elegans Hypothetical pr... 28 5.7
Z19153-7|CAA79550.2| 1374|Caenorhabditis elegans Hypothetical pr... 28 5.7
Z19153-6|CAA79551.2| 1368|Caenorhabditis elegans Hypothetical pr... 28 5.7
U80023-14|AAG24047.2| 334|Caenorhabditis elegans Serpentine rec... 27 7.5
AL021175-9|CAA15969.2| 444|Caenorhabditis elegans Hypothetical ... 27 7.5
AC006767-1|AAF60573.2| 332|Caenorhabditis elegans Serpentine re... 27 7.5
AC026301-4|AAK68895.1| 347|Caenorhabditis elegans Hypothetical ... 27 10.0
>Z81474-5|CAB03906.1| 361|Caenorhabditis elegans Hypothetical
protein C18D4.9 protein.
Length = 361
Score = 37.9 bits (84), Expect = 0.005
Identities = 20/74 (27%), Positives = 38/74 (51%), Gaps = 5/74 (6%)
Frame = -2
Query: 250 IYIPYIYISLNVCIKCLLQYLVFL--EIGALHNYTLFFIALQIRNTLVEIILV---FRAY 86
++I ++ +NVC K ++ Y V L I ++ FF+ LQ+ + L+ ++ + R +
Sbjct: 77 LFIGFLISEINVCSKPVVNYRVILIFSIASIIQLLRFFVTLQVFHVLIFMLAIQNFLRFF 136
Query: 85 FKCKCLKECLELHK 44
F KC +HK
Sbjct: 137 FPLKCSSSLNSIHK 150
>AF025452-8|AAB70940.1| 324|Caenorhabditis elegans Serpentine
receptor, class i protein31 protein.
Length = 324
Score = 35.5 bits (78), Expect = 0.028
Identities = 16/52 (30%), Positives = 28/52 (53%)
Frame = -2
Query: 250 IYIPYIYISLNVCIKCLLQYLVFLEIGALHNYTLFFIALQIRNTLVEIILVF 95
IY YI ++ +C+ L+ YL+ G L N+ + +A QI T ++ + F
Sbjct: 14 IYHYYISGTIAICLNLLVIYLILFHSGKLDNFRFYLLAFQIWCTASDVNIAF 65
>AF025452-7|AAB70941.2| 335|Caenorhabditis elegans Serpentine
receptor, class i protein28 protein.
Length = 335
Score = 31.9 bits (69), Expect = 0.35
Identities = 15/52 (28%), Positives = 27/52 (51%)
Frame = -2
Query: 250 IYIPYIYISLNVCIKCLLQYLVFLEIGALHNYTLFFIALQIRNTLVEIILVF 95
IY Y ++ VC+ L+ YL+ G L ++ + +A QI T ++ + F
Sbjct: 16 IYHFYTTGTIAVCLNILVIYLILFHSGKLDSFRFYLLAFQIACTSSDVNIAF 67
>AC024799-2|AAK72317.3| 328|Caenorhabditis elegans Serpentine
receptor, class j protein53 protein.
Length = 328
Score = 29.9 bits (64), Expect = 1.4
Identities = 13/52 (25%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Frame = -2
Query: 250 IYIPYIYISLNVCIKCLLQYLVFLEIGA-LHNYTLFFIALQIRNTLVEIILV 98
+YIP ++ +L+ + + YL+F E A NY ++ + N + ++ V
Sbjct: 8 LYIPRLFCALSFLVNPIFVYLIFSEKSANFGNYRFLLLSFAVFNLIYSVVNV 59
>AC087081-8|AAY55899.1| 499|Caenorhabditis elegans Hypothetical
protein Y82E9BL.18 protein.
Length = 499
Score = 28.3 bits (60), Expect = 4.3
Identities = 16/62 (25%), Positives = 30/62 (48%)
Frame = -2
Query: 238 YIYISLNVCIKCLLQYLVFLEIGALHNYTLFFIALQIRNTLVEIILVFRAYFKCKCLKEC 59
Y+ ++LN I CL L+ L+I H++ +F L+ R + + F+ + +C
Sbjct: 96 YVEMALNDMIGCLQHSLILLKIHLNHHFNVFMDKLRGRVHTQNVSIRFQNPCNIIAVLQC 155
Query: 58 LE 53
E
Sbjct: 156 CE 157
>Z81088-6|CAB03123.1| 272|Caenorhabditis elegans Hypothetical
protein F53F1.6 protein.
Length = 272
Score = 27.9 bits (59), Expect = 5.7
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = +2
Query: 284 WDISKCKKALLRDCFVQSWARFYHDTTITL 373
W+ K LLR CF ++W R T +T+
Sbjct: 122 WEDIKAMSVLLRSCFNKTWDRHSEVTLLTV 151
>Z29115-6|CAA82365.2| 1374|Caenorhabditis elegans Hypothetical
protein C38C10.5b protein.
Length = 1374
Score = 27.9 bits (59), Expect = 5.7
Identities = 14/47 (29%), Positives = 25/47 (53%)
Frame = -1
Query: 236 YLYIFKCLYKMSVAISRILRNRCSA*LYIVFHCVTDKKYFGRDYISI 96
YLY++K +++ S+A + +N C+ Y FH + RD + I
Sbjct: 689 YLYMYKVVHQFSLAYEKHFKNYCNIEAY-TFHKLVVSYGDNRDMLMI 734
>Z29115-5|CAA82366.2| 1368|Caenorhabditis elegans Hypothetical
protein C38C10.5a protein.
Length = 1368
Score = 27.9 bits (59), Expect = 5.7
Identities = 14/47 (29%), Positives = 25/47 (53%)
Frame = -1
Query: 236 YLYIFKCLYKMSVAISRILRNRCSA*LYIVFHCVTDKKYFGRDYISI 96
YLY++K +++ S+A + +N C+ Y FH + RD + I
Sbjct: 683 YLYMYKVVHQFSLAYEKHFKNYCNIEAY-TFHKLVVSYGDNRDMLMI 728
>Z19153-7|CAA79550.2| 1374|Caenorhabditis elegans Hypothetical
protein C38C10.5b protein.
Length = 1374
Score = 27.9 bits (59), Expect = 5.7
Identities = 14/47 (29%), Positives = 25/47 (53%)
Frame = -1
Query: 236 YLYIFKCLYKMSVAISRILRNRCSA*LYIVFHCVTDKKYFGRDYISI 96
YLY++K +++ S+A + +N C+ Y FH + RD + I
Sbjct: 689 YLYMYKVVHQFSLAYEKHFKNYCNIEAY-TFHKLVVSYGDNRDMLMI 734
>Z19153-6|CAA79551.2| 1368|Caenorhabditis elegans Hypothetical
protein C38C10.5a protein.
Length = 1368
Score = 27.9 bits (59), Expect = 5.7
Identities = 14/47 (29%), Positives = 25/47 (53%)
Frame = -1
Query: 236 YLYIFKCLYKMSVAISRILRNRCSA*LYIVFHCVTDKKYFGRDYISI 96
YLY++K +++ S+A + +N C+ Y FH + RD + I
Sbjct: 683 YLYMYKVVHQFSLAYEKHFKNYCNIEAY-TFHKLVVSYGDNRDMLMI 728
>U80023-14|AAG24047.2| 334|Caenorhabditis elegans Serpentine
receptor, class h protein234 protein.
Length = 334
Score = 27.5 bits (58), Expect = 7.5
Identities = 13/62 (20%), Positives = 31/62 (50%)
Frame = -2
Query: 280 MLYEISLSTKIYIPYIYISLNVCIKCLLQYLVFLEIGALHNYTLFFIALQIRNTLVEIIL 101
M +++ ++ + ++ V ++C++ ++ F HN +FF AL I +I+
Sbjct: 230 MQHKLVIALIVQSSVTFVLFIVPVQCIVTFVYFHHQNQFHNNLIFF-ALAIHGIASTLIM 288
Query: 100 VF 95
+F
Sbjct: 289 IF 290
>AL021175-9|CAA15969.2| 444|Caenorhabditis elegans Hypothetical
protein Y6E2A.8 protein.
Length = 444
Score = 27.5 bits (58), Expect = 7.5
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = -2
Query: 553 IRDNHSRSRSNLTGLKYM*TSSSNPLL 473
+RDN+ + S LT L+Y+ SS PLL
Sbjct: 105 LRDNNFKRFSALTSLEYLAVLSSEPLL 131
>AC006767-1|AAF60573.2| 332|Caenorhabditis elegans Serpentine
receptor, class j protein55 protein.
Length = 332
Score = 27.5 bits (58), Expect = 7.5
Identities = 13/52 (25%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Frame = -2
Query: 250 IYIPYIYISLNVCIKCLLQYLVFLEIGA-LHNYTLFFIALQIRNTLVEIILV 98
+YIP I+ L+ + + YL+F E NY + + N + ++ V
Sbjct: 8 LYIPLIFCGLSFLVNPVFIYLIFTEKSTNFGNYRYLLLYFALFNLIYSVVYV 59
>AC026301-4|AAK68895.1| 347|Caenorhabditis elegans Hypothetical
protein Y54F10BM.4 protein.
Length = 347
Score = 27.1 bits (57), Expect = 10.0
Identities = 13/32 (40%), Positives = 21/32 (65%)
Frame = -2
Query: 139 ALQIRNTLVEIILVFRAYFKCKCLKECLELHK 44
++++RN L E I+ F +YF LK C++L K
Sbjct: 134 SIELRNFLFEDIVAFLSYFDTHTLK-CIKLGK 164
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,386,742
Number of Sequences: 27780
Number of extensions: 271386
Number of successful extensions: 598
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 585
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 598
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1247656244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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