Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5546
         (590 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435325-1|ABD92640.1|  160|Apis mellifera OBP7 protein.               25   0.56 
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    21   6.8  
DQ435337-1|ABD92652.1|  135|Apis mellifera OBP20 protein.              21   9.0  
DQ435336-1|ABD92651.1|  135|Apis mellifera OBP19 protein.              21   9.0  

>DQ435325-1|ABD92640.1|  160|Apis mellifera OBP7 protein.
          Length = 160

 Score = 25.0 bits (52), Expect = 0.56
 Identities = 15/41 (36%), Positives = 20/41 (48%)
 Frame = +3

Query: 105 IISTKVFLICNAMKNNV*LCRAPISKNTRYCNRHFIQTFKD 227
           I+S  V +  N + N +    A   K+ RYC  H   TFKD
Sbjct: 11  ILSVAVIIRANGI-NEILKIMAVSMKDIRYCIIHMGLTFKD 50


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -2

Query: 520 LTGLKYM*TSSSNPLLYPV 464
           LTG  Y  +++ NP+LY V
Sbjct: 300 LTGCLYYFSTTINPILYNV 318


>DQ435337-1|ABD92652.1|  135|Apis mellifera OBP20 protein.
          Length = 135

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = -2

Query: 235 IYISLNVCIKCLLQYLVFLEI 173
           IYI  N  +KC  +Y    E+
Sbjct: 112 IYIRFNKLVKCFGKYKTMKEV 132


>DQ435336-1|ABD92651.1|  135|Apis mellifera OBP19 protein.
          Length = 135

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = -2

Query: 235 IYISLNVCIKCLLQYLVFLEI 173
           IYI  N  +KC  +Y    E+
Sbjct: 112 IYIRFNKLVKCFGKYKTMKEV 132


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 166,915
Number of Sequences: 438
Number of extensions: 3287
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17237673
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)