Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-5545
(436 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC962.04 |rps1201|rps12-1, rps12|40S ribosomal protein S12|Sch... 131 4e-32
SPBC1685.02c |rps1202|rps12-2|40S ribosomal protein S12|Schizosa... 131 5e-32
SPBC106.13 |||conserved eukaryotic protein|Schizosaccharomyces p... 29 0.23
SPAC1782.10c |nhp2||RNA-binding protein Nhp2 |Schizosaccharomyce... 27 0.94
SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein lig... 27 1.2
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra... 27 1.2
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 26 2.2
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 26 2.9
SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyce... 26 2.9
SPBC1711.12 |||serine peptidase |Schizosaccharomyces pombe|chr 2... 25 5.0
SPBC1711.10c |npl4||Cdc48-Ufd1-Npl4 complex component Npl4 |Schi... 25 5.0
SPAPJ696.01c |vps17||retromer complex subunit Vps17|Schizosaccha... 25 5.0
SPAC57A10.08c |||esterase/lipase |Schizosaccharomyces pombe|chr ... 25 5.0
SPBC31F10.16 |||ChAPs family protein|Schizosaccharomyces pombe|c... 25 6.7
SPAC1A6.11 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 25 6.7
SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2 |Schiz... 25 6.7
SPCC63.04 |mok14||alpha-1,3-glucan synthase Mok14|Schizosaccharo... 24 8.8
SPBC13G1.15c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual 24 8.8
SPBC2G2.08 |ade9||C-1-tetrahydrofolatesynthase/methylenetetrahyd... 24 8.8
>SPCC962.04 |rps1201|rps12-1, rps12|40S ribosomal protein
S12|Schizosaccharomyces pombe|chr 3|||Manual
Length = 145
Score = 131 bits (317), Expect = 4e-32
Identities = 62/113 (54%), Positives = 80/113 (70%)
Frame = +1
Query: 79 MGVNVALQEVLKTALIHGGVVHGLYEAVKAFDKRQAVLCVLAENCDEVVYKKLVQALCNE 258
+ V AL+EVLK AL+H G+ G+ EA KA D+RQA LCVL E+CD+ Y KLV+ALC E
Sbjct: 27 VSVEDALKEVLKRALVHDGLARGIREASKALDRRQAHLCVLCESCDQEAYVKLVEALCAE 86
Query: 259 H*ISLVKGDNNKKLGEWAGLCKIDKDGKARKIVGWFCVVIKDFGEETPALDVL 417
L+K + K LGEWAGLC +D+DG ARK+VG CV + D+GE++ AL L
Sbjct: 87 SETPLIKVADPKVLGEWAGLCVLDRDGNARKVVGCSCVAVTDYGEDSAALQKL 139
>SPBC1685.02c |rps1202|rps12-2|40S ribosomal protein
S12|Schizosaccharomyces pombe|chr 2|||Manual
Length = 148
Score = 131 bits (316), Expect = 5e-32
Identities = 62/113 (54%), Positives = 80/113 (70%)
Frame = +1
Query: 79 MGVNVALQEVLKTALIHGGVVHGLYEAVKAFDKRQAVLCVLAENCDEVVYKKLVQALCNE 258
+ V +L+EVLK AL+H G+ G+ EA KA D+RQA LCVL E+CD+ Y KLV+ALC E
Sbjct: 30 LSVEDSLKEVLKRALVHDGLARGIREASKALDRRQAHLCVLCESCDQEAYVKLVEALCAE 89
Query: 259 H*ISLVKGDNNKKLGEWAGLCKIDKDGKARKIVGWFCVVIKDFGEETPALDVL 417
LVK + K LGEWAGLC +D+DG ARK+VG CV + D+GE++ AL L
Sbjct: 90 SQTPLVKVADPKILGEWAGLCVLDRDGNARKVVGCSCVAVTDYGEDSVALQTL 142
>SPBC106.13 |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 404
Score = 29.5 bits (63), Expect = 0.23
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = -2
Query: 405 RWSFLAKIFDDNTEPANNFPCLPIL 331
RW +LA +F N +N P +P+L
Sbjct: 257 RWEYLASLFTSNFTAVHNIPSVPLL 281
>SPAC1782.10c |nhp2||RNA-binding protein Nhp2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 154
Score = 27.5 bits (58), Expect = 0.94
Identities = 17/74 (22%), Positives = 35/74 (47%)
Frame = +1
Query: 85 VNVALQEVLKTALIHGGVVHGLYEAVKAFDKRQAVLCVLAENCDEVVYKKLVQALCNEH* 264
+N + + +K A ++ G+ E VKA K + L +LA + + + LC ++
Sbjct: 37 LNKKMMKTVKKASKQKHILRGVKEVVKAVRKGEKGLVILAGDISPMDVISHIPVLCEDNN 96
Query: 265 ISLVKGDNNKKLGE 306
+ + + + LGE
Sbjct: 97 VPYLYTVSKELLGE 110
>SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein ligase
E3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1647
Score = 27.1 bits (57), Expect = 1.2
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = +1
Query: 121 LIHGGVVHGLYEAVKAFDKRQAVLCVLAEN-CDE 219
L+H G++H L ++K F +LA N CDE
Sbjct: 896 LLHSGLIHNLLLSLKKFGSSSLRTFLLAMNTCDE 929
>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
transcription Rct1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 27.1 bits (57), Expect = 1.2
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = -3
Query: 95 ATFTPMLLPDKMGLVGTSTST 33
A F P L+ +KMGLV ST+T
Sbjct: 80 AEFNPSLVHNKMGLVSMSTAT 100
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 26.2 bits (55), Expect = 2.2
Identities = 17/67 (25%), Positives = 29/67 (43%)
Frame = -3
Query: 239 TSFLYTTSSQFSAKTHSTACLLSKALTAS*RPCTTPPWIKAVFSTSCSATFTPMLLPDKM 60
TS YT++ S +T C S ++ + P T+ P +TS S +T +
Sbjct: 454 TSVPYTSTPVTSTPLTTTNCTTSTSIPYTSTPVTSTPLTTTNCTTSTSVPYTSTPVTSSN 513
Query: 59 GLVGTST 39
+ +ST
Sbjct: 514 YTISSST 520
Score = 25.0 bits (52), Expect = 5.0
Identities = 19/71 (26%), Positives = 31/71 (43%), Gaps = 1/71 (1%)
Frame = -3
Query: 239 TSFLYTTSSQFSAKTHSTACLLSKALTAS*RPCTTPPWIKAVFSTSCSATFTPM-LLPDK 63
TS YT++ S +T C S ++ + P T+ P +TS S +T +
Sbjct: 431 TSVPYTSTPVTSTPLATTNCTTSTSVPYTSTPVTSTPLTTTNCTTSTSIPYTSTPVTSTP 490
Query: 62 MGLVGTSTSTS 30
+ +TSTS
Sbjct: 491 LTTTNCTTSTS 501
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 25.8 bits (54), Expect = 2.9
Identities = 18/74 (24%), Positives = 40/74 (54%), Gaps = 1/74 (1%)
Frame = -3
Query: 239 TSFLYTTSSQFS-AKTHSTACLLSKALTAS*RPCTTPPWIKAVFSTSCSATFTPMLLPDK 63
TSF TSS+++ + T S++ L +++++ P +T ++ S+S ++ P+
Sbjct: 118 TSFFSPTSSEYTPSSTESSSLLDPSSVSSAILPSSTS--VEVSISSSSLSSSDPLTSSTF 175
Query: 62 MGLVGTSTSTSPMV 21
L +++S+ P V
Sbjct: 176 SSLSSSTSSSQPSV 189
>SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 259
Score = 25.8 bits (54), Expect = 2.9
Identities = 14/56 (25%), Positives = 26/56 (46%)
Frame = +1
Query: 136 VVHGLYEAVKAFDKRQAVLCVLAENCDEVVYKKLVQALCNEH*ISLVKGDNNKKLG 303
V +GL V + ++A L ++A + D + + ALC + + N +LG
Sbjct: 132 VKYGLNHVVALIEAKKAKLVLIASDVDPIELVVFLPALCKKMGVPYAIVKNKARLG 187
>SPBC1711.12 |||serine peptidase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 683
Score = 25.0 bits (52), Expect = 5.0
Identities = 13/48 (27%), Positives = 22/48 (45%)
Frame = +1
Query: 34 VEVEVPTNPILSGNNMGVNVALQEVLKTALIHGGVVHGLYEAVKAFDK 177
+ VE +L NN+G++ E + HG +H ++FDK
Sbjct: 394 INVETLNESVLLENNVGLSPTSYEEIWFPGTHGHRIHAWIVKPESFDK 441
>SPBC1711.10c |npl4||Cdc48-Ufd1-Npl4 complex component Npl4
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 545
Score = 25.0 bits (52), Expect = 5.0
Identities = 11/37 (29%), Positives = 20/37 (54%)
Frame = -2
Query: 393 LAKIFDDNTEPANNFPCLPILVNLAKTSPFSKLFVVV 283
LAK+FD N + +L+ +AK S K+ +++
Sbjct: 503 LAKLFDHNAIANGSLSNFSVLLAIAKLSILGKVSIII 539
>SPAPJ696.01c |vps17||retromer complex subunit
Vps17|Schizosaccharomyces pombe|chr 1|||Manual
Length = 549
Score = 25.0 bits (52), Expect = 5.0
Identities = 10/28 (35%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Frame = -1
Query: 373 QHRTSQQFSLPSHPCQSCKD-QPILQAF 293
+ + +QF LP PCQ+ + +PI+++F
Sbjct: 226 KRKALKQFPLPPDPCQALANLRPIVKSF 253
>SPAC57A10.08c |||esterase/lipase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 364
Score = 25.0 bits (52), Expect = 5.0
Identities = 11/36 (30%), Positives = 17/36 (47%)
Frame = -2
Query: 402 WSFLAKIFDDNTEPANNFPCLPILVNLAKTSPFSKL 295
W + ++ EP +FP PIL+ + P S L
Sbjct: 279 WKTMLMGLEELLEPGFHFPKCPILILFGEFDPVSSL 314
>SPBC31F10.16 |||ChAPs family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 679
Score = 24.6 bits (51), Expect = 6.7
Identities = 12/31 (38%), Positives = 15/31 (48%), Gaps = 4/31 (12%)
Frame = +3
Query: 306 MGWSLQD*QGWEGKENCWL----VLCCHQRF 386
+ +SL Q W GK N W V CC+ F
Sbjct: 108 LSYSLDKSQQWFGKGNAWRVSHGVYCCYNVF 138
>SPAC1A6.11 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 106
Score = 24.6 bits (51), Expect = 6.7
Identities = 15/60 (25%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
Frame = -2
Query: 240 NKFLVYDFITVLS---QNT*YCLPLVKSFNGFVKTVHNTTMD*SCL*HLLQCYIHAHVVT 70
N F + F+ V S + + + S N + +HN + + +L +CY H H++T
Sbjct: 28 NSFFPHSFMFVKSLHLMTSQHIFKCLSSCNYALSILHNICL--ASFLYLSKCYYHTHILT 85
>SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1273
Score = 24.6 bits (51), Expect = 6.7
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = -3
Query: 419 LSTSNAGVSSPKSLMTTQNQPTIFLAFP 336
L SNAGV+ + T PT+ +FP
Sbjct: 164 LGNSNAGVAQQSGMRTIGLPPTVGSSFP 191
>SPCC63.04 |mok14||alpha-1,3-glucan synthase
Mok14|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1369
Score = 24.2 bits (50), Expect = 8.8
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +1
Query: 274 VKGDNNKKLGEWAGLCKIDKDGKARKIVGWFCV 372
V+ +N +K EWAGL ID + VG + V
Sbjct: 527 VRKENKRKAQEWAGL-TIDDEADLLVFVGRWSV 558
>SPBC13G1.15c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual
Length = 111
Score = 24.2 bits (50), Expect = 8.8
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = -2
Query: 222 DFITVLSQNT*YCLPLVKSFNGFVKTVHNT 133
D ++VL N YCLP +F FVK + T
Sbjct: 83 DKVSVLP-NRLYCLPFCNAFIEFVKKLTET 111
>SPBC2G2.08 |ade9||C-1-
tetrahydrofolatesynthase/methylenetetrahydrofolatedehydr
ogenase/methylenetetrahydrofolatecyclohydrolase/formylte
trahydrofolatesynthetase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 969
Score = 24.2 bits (50), Expect = 8.8
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = +2
Query: 347 GKLLAGSVLSSKILARKLQR 406
G + ++L+ K+LARKLQR
Sbjct: 28 GTSSSANILNGKLLARKLQR 47
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,948,739
Number of Sequences: 5004
Number of extensions: 39152
Number of successful extensions: 137
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 156095170
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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