Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-5545
(436 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0875 - 7265529-7265588,7265681-7265746,7266008-7266293,726... 152 1e-37
07_01_0360 + 2646279-2646283,2647113-2647398,2648043-2648108,264... 151 2e-37
02_05_0441 + 29040250-29040524,29040656-29040772,29040834-290411... 32 0.18
02_05_0105 + 25874155-25874495,25874586-25874615,25875327-258754... 31 0.54
11_01_0570 - 4529901-4529962,4530725-4530800,4531247-4531306,453... 30 0.94
11_08_0098 - 28334865-28336114,28336228-28336357 29 1.6
12_01_1092 - 11362094-11362367,11362739-11362795,11363256-113636... 29 2.2
08_02_0101 + 12374476-12376683 28 3.8
01_06_0360 - 28729006-28729446,28729810-28730258,28730499-28731480 28 3.8
11_03_0180 - 11294527-11294823,11295847-11295852 27 5.0
03_05_0743 - 27317823-27317969,27318027-27319997,27320335-27321435 27 8.7
>07_01_0875 -
7265529-7265588,7265681-7265746,7266008-7266293,
7267138-7267142
Length = 138
Score = 152 bits (369), Expect = 1e-37
Identities = 74/134 (55%), Positives = 95/134 (70%)
Frame = +1
Query: 31 DVEVEVPTNPILSGNNMGVNVALQEVLKTALIHGGVVHGLYEAVKAFDKRQAVLCVLAEN 210
+ VE P P+L G M + ALQ V+K + H G+V GL EA KA +K A LCVLAE+
Sbjct: 4 ETPVEAPPAPVL-GEPMDLMTALQLVMKKSSAHDGLVKGLREAAKAIEKHAAQLCVLAED 62
Query: 211 CDEVVYKKLVQALCNEH*ISLVKGDNNKKLGEWAGLCKIDKDGKARKIVGWFCVVIKDFG 390
CD+ Y KLV+ALC EH + LV + K LGEWAGLCKID +GKARK+VG CVV+KDFG
Sbjct: 63 CDQPDYVKLVKALCAEHNVHLVTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFG 122
Query: 391 EETPALDVLKDYLK 432
EE+ L++++DY+K
Sbjct: 123 EESEGLNIVQDYVK 136
>07_01_0360 +
2646279-2646283,2647113-2647398,2648043-2648108,
2648199-2648258
Length = 138
Score = 151 bits (367), Expect = 2e-37
Identities = 73/134 (54%), Positives = 95/134 (70%)
Frame = +1
Query: 31 DVEVEVPTNPILSGNNMGVNVALQEVLKTALIHGGVVHGLYEAVKAFDKRQAVLCVLAEN 210
+ VE P P+L G M + ALQ V+K + H G+V GL EA KA +K A LCVLAE+
Sbjct: 4 ETPVETPAAPVL-GEPMDLMTALQLVMKKSSAHDGLVKGLREAAKAIEKHAAQLCVLAED 62
Query: 211 CDEVVYKKLVQALCNEH*ISLVKGDNNKKLGEWAGLCKIDKDGKARKIVGWFCVVIKDFG 390
CD+ Y KLV+ALC EH + LV + K LGEWAGLCKID +GKARK+VG CVV+KD+G
Sbjct: 63 CDQPDYVKLVKALCAEHNVHLVTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDYG 122
Query: 391 EETPALDVLKDYLK 432
EE+ L++++DY+K
Sbjct: 123 EESEGLNIVQDYVK 136
>02_05_0441 +
29040250-29040524,29040656-29040772,29040834-29041143,
29041863-29042018,29042332-29042483,29042783-29042936,
29043897-29043998,29044168-29044209
Length = 435
Score = 32.3 bits (70), Expect = 0.18
Identities = 21/80 (26%), Positives = 36/80 (45%)
Frame = +2
Query: 188 YYVFWLRTVMKSYTRNLFRLCATNIRFHWSRVTTTKSLENGLVFARLTRMGRQGKLLAGS 367
Y V W R K + CA+ + S V ++++ + LV + +T G LA +
Sbjct: 349 YLVTWARHREKLTIGVPYETCASELLESTSHVVKSRNMASKLVVSAITSFGYILSSLAQN 408
Query: 368 VLSSKILARKLQRWMCSRTT 427
V + + A+K+Q C T
Sbjct: 409 VDTERSAAKKIQAKFCDSET 428
>02_05_0105 +
25874155-25874495,25874586-25874615,25875327-25875433,
25875884-25875918,25876310-25876438,25877103-25877294
Length = 277
Score = 30.7 bits (66), Expect = 0.54
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = -1
Query: 109 APLAVLHSRPCCYPTRWGWWGPRLQHHP 26
+PLA +RPC +PT W P L+ P
Sbjct: 7 SPLAAAAARPCAFPTPWRCRSPPLRRLP 34
>11_01_0570 -
4529901-4529962,4530725-4530800,4531247-4531306,
4533797-4533959,4534037-4534091,4534314-4534366,
4534881-4534980,4535556-4535703,4535964-4536056
Length = 269
Score = 29.9 bits (64), Expect = 0.94
Identities = 9/22 (40%), Positives = 16/22 (72%)
Frame = -2
Query: 102 LQCYIHAHVVTRQDGVGGDLDF 37
++CY H H++T+ +G GGD +
Sbjct: 213 IECYEHNHLITKVEGDGGDSSY 234
>11_08_0098 - 28334865-28336114,28336228-28336357
Length = 459
Score = 29.1 bits (62), Expect = 1.6
Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Frame = -1
Query: 154 RKDRAQHHHGLKLSLAPLAVLHSRPC-CYPTRWGWWGPRLQHHPWL 20
RK + +HHH + A+L R C + TR PR +HP L
Sbjct: 169 RKSKLKHHHPPPATATDPALLARRSCDAFSTRTMLDEPRASYHPTL 214
>12_01_1092 -
11362094-11362367,11362739-11362795,11363256-11363683,
11364350-11365462
Length = 623
Score = 28.7 bits (61), Expect = 2.2
Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 4/51 (7%)
Frame = +1
Query: 163 KAFD--KRQAVLCVL--AENCDEVVYKKLVQALCNEH*ISLVKGDNNKKLG 303
KAFD VL ++ A CDE +K + +CN SL + D+N +G
Sbjct: 299 KAFDCVSHDMVLKMIDDAFKCDEYTVRKCSKVICNRSKNSLYRFDSNASIG 349
>08_02_0101 + 12374476-12376683
Length = 735
Score = 27.9 bits (59), Expect = 3.8
Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Frame = +1
Query: 85 VNVALQEVLKTALIHGGVVHGLYEAVKAFDKRQAVLCVLAENC--DEVVYKKLVQALC 252
V + L+ L+TA + ++HGL A + + + A++C D VY +V LC
Sbjct: 131 VLMPLRGCLRTAFTYTALLHGLLGAGMVREAMAVFVGMRADSCAPDTHVYATMVHGLC 188
>01_06_0360 - 28729006-28729446,28729810-28730258,28730499-28731480
Length = 623
Score = 27.9 bits (59), Expect = 3.8
Identities = 13/32 (40%), Positives = 15/32 (46%)
Frame = +3
Query: 315 SLQD*QGWEGKENCWLVLCCHQRFWRGNSSVG 410
S Q +G KE CW C+ WR N S G
Sbjct: 3 SEQSIRGIPSKEACWATHSCNGDLWRRNLSRG 34
>11_03_0180 - 11294527-11294823,11295847-11295852
Length = 100
Score = 27.5 bits (58), Expect = 5.0
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = -1
Query: 226 IRLHHSSQPKHIVLLASCQKL*RLRKDRAQ 137
+RLHH S I +LA C+K L+++R +
Sbjct: 3 VRLHHWSDEDCIKILAQCKKAVPLQEERGK 32
>03_05_0743 - 27317823-27317969,27318027-27319997,27320335-27321435
Length = 1072
Score = 26.6 bits (56), Expect = 8.7
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = +2
Query: 284 TTTKSLENGLVFARLTRMGRQGKL 355
TTTK+ G+ F +L R+G QG L
Sbjct: 879 TTTKTEGAGIAFPKLKRLGFQGML 902
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,117,405
Number of Sequences: 37544
Number of extensions: 271371
Number of successful extensions: 937
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 920
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 937
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 826450812
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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