Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-5545
(436 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U00067-8|AAK20077.1| 140|Caenorhabditis elegans Ribosomal prote... 117 4e-27
AC006712-6|AAO21405.1| 765|Caenorhabditis elegans Temporarily a... 32 0.21
AC006712-5|AAK39326.2| 851|Caenorhabditis elegans Temporarily a... 32 0.21
Z82258-4|CAL44968.1| 1467|Caenorhabditis elegans Hypothetical pr... 30 0.63
Z82258-3|CAL44967.1| 1538|Caenorhabditis elegans Hypothetical pr... 30 0.63
AL023835-19|CAL44978.1| 1467|Caenorhabditis elegans Hypothetical... 30 0.63
AL023835-18|CAL44977.1| 1538|Caenorhabditis elegans Hypothetical... 30 0.63
AC024805-6|AAK39340.1| 448|Caenorhabditis elegans Hypothetical ... 29 1.9
Z70754-5|CAA94775.1| 304|Caenorhabditis elegans Hypothetical pr... 27 4.4
AC024763-10|AAK93862.2| 598|Caenorhabditis elegans Hypothetical... 27 4.4
Z81114-2|CAB03286.1| 604|Caenorhabditis elegans Hypothetical pr... 27 5.9
U80839-7|AAB37915.1| 306|Caenorhabditis elegans Hypothetical pr... 27 5.9
U00043-12|AAC77504.2| 613|Caenorhabditis elegans Hypothetical p... 27 5.9
Z92806-5|CAB07255.2| 1251|Caenorhabditis elegans Hypothetical pr... 27 7.8
Z68297-6|CAE45045.1| 302|Caenorhabditis elegans Hypothetical pr... 27 7.8
AF068720-3|AAC17786.1| 332|Caenorhabditis elegans Seven tm rece... 27 7.8
AF047655-8|AAC04397.1| 227|Caenorhabditis elegans Hypothetical ... 27 7.8
AC024772-3|AAF60538.1| 2344|Caenorhabditis elegans Hypothetical ... 27 7.8
>U00067-8|AAK20077.1| 140|Caenorhabditis elegans Ribosomal protein,
small subunitprotein 12 protein.
Length = 140
Score = 117 bits (281), Expect = 4e-27
Identities = 61/130 (46%), Positives = 80/130 (61%)
Frame = +1
Query: 37 EVEVPTNPILSGNNMGVNVALQEVLKTALIHGGVVHGLYEAVKAFDKRQAVLCVLAENCD 216
+V+V + G M AL+ VL+ A G+ GL+E KA DKR+A CVLAENCD
Sbjct: 7 DVQVAPAAVAQGP-MDKEGALRAVLRAAHHADGLAKGLHETCKALDKREAHFCVLAENCD 65
Query: 217 EVVYKKLVQALCNEH*ISLVKGDNNKKLGEWAGLCKIDKDGKARKIVGWFCVVIKDFGEE 396
E Y KLV+ LC EH I L+K + K +GE+ GLCK DK+GKARK+VG V+ ++G E
Sbjct: 66 EPQYVKLVETLCAEHQIPLIKVADKKIIGEYCGLCKYDKEGKARKVVGCSSAVVTNWGNE 125
Query: 397 TPALDVLKDY 426
+L DY
Sbjct: 126 EQGRAILTDY 135
>AC006712-6|AAO21405.1| 765|Caenorhabditis elegans Temporarily
assigned gene nameprotein 332, isoform b protein.
Length = 765
Score = 31.9 bits (69), Expect = 0.21
Identities = 15/53 (28%), Positives = 29/53 (54%)
Frame = +1
Query: 139 VHGLYEAVKAFDKRQAVLCVLAENCDEVVYKKLVQALCNEH*ISLVKGDNNKK 297
+ +++ F+ ++ + ++A+N EV+ K L QA EH + + G N KK
Sbjct: 110 IETVFQNCYTFNGKEDDVTIMAQNVHEVIKKSLEQAPREEHDMDVYWGKNKKK 162
>AC006712-5|AAK39326.2| 851|Caenorhabditis elegans Temporarily
assigned gene nameprotein 332, isoform a protein.
Length = 851
Score = 31.9 bits (69), Expect = 0.21
Identities = 15/53 (28%), Positives = 29/53 (54%)
Frame = +1
Query: 139 VHGLYEAVKAFDKRQAVLCVLAENCDEVVYKKLVQALCNEH*ISLVKGDNNKK 297
+ +++ F+ ++ + ++A+N EV+ K L QA EH + + G N KK
Sbjct: 110 IETVFQNCYTFNGKEDDVTIMAQNVHEVIKKSLEQAPREEHDMDVYWGKNKKK 162
>Z82258-4|CAL44968.1| 1467|Caenorhabditis elegans Hypothetical protein
Y37A1B.17b protein.
Length = 1467
Score = 30.3 bits (65), Expect = 0.63
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = -2
Query: 396 FLAKIFDDNTEPANNFPCLPILVNLAKTSPFSKLFV 289
F +F+ N+ P P LP++VN + PFS FV
Sbjct: 1247 FQTGVFNPNSLPDEAPPPLPVIVNPTRDDPFSTNFV 1282
>Z82258-3|CAL44967.1| 1538|Caenorhabditis elegans Hypothetical protein
Y37A1B.17a protein.
Length = 1538
Score = 30.3 bits (65), Expect = 0.63
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = -2
Query: 396 FLAKIFDDNTEPANNFPCLPILVNLAKTSPFSKLFV 289
F +F+ N+ P P LP++VN + PFS FV
Sbjct: 1247 FQTGVFNPNSLPDEAPPPLPVIVNPTRDDPFSTNFV 1282
>AL023835-19|CAL44978.1| 1467|Caenorhabditis elegans Hypothetical
protein Y37A1B.17b protein.
Length = 1467
Score = 30.3 bits (65), Expect = 0.63
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = -2
Query: 396 FLAKIFDDNTEPANNFPCLPILVNLAKTSPFSKLFV 289
F +F+ N+ P P LP++VN + PFS FV
Sbjct: 1247 FQTGVFNPNSLPDEAPPPLPVIVNPTRDDPFSTNFV 1282
>AL023835-18|CAL44977.1| 1538|Caenorhabditis elegans Hypothetical
protein Y37A1B.17a protein.
Length = 1538
Score = 30.3 bits (65), Expect = 0.63
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = -2
Query: 396 FLAKIFDDNTEPANNFPCLPILVNLAKTSPFSKLFV 289
F +F+ N+ P P LP++VN + PFS FV
Sbjct: 1247 FQTGVFNPNSLPDEAPPPLPVIVNPTRDDPFSTNFV 1282
>AC024805-6|AAK39340.1| 448|Caenorhabditis elegans Hypothetical
protein Y51H7C.9 protein.
Length = 448
Score = 28.7 bits (61), Expect = 1.9
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +1
Query: 130 GGVVHGLYEAVKAFDKRQAVLCVLAENCDEVV 225
GG+V G+ AVKA V+ V++E C +V
Sbjct: 216 GGLVAGVATAVKALSPTTEVIGVVSETCQAIV 247
>Z70754-5|CAA94775.1| 304|Caenorhabditis elegans Hypothetical
protein F58E6.5 protein.
Length = 304
Score = 27.5 bits (58), Expect = 4.4
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = -3
Query: 140 TTPPWIKAVFSTSCSATFTPMLLPDKMGLVGTSTSTSPMVVNY 12
T P K VF+ S S TF P+ + + + STS + V +
Sbjct: 3 TAPDLTKVVFNPSKSVTFAPVEKKQAVSIEVINNSTSDVAVKF 45
>AC024763-10|AAK93862.2| 598|Caenorhabditis elegans Hypothetical
protein Y39A3CL.1 protein.
Length = 598
Score = 27.5 bits (58), Expect = 4.4
Identities = 10/34 (29%), Positives = 17/34 (50%)
Frame = -2
Query: 393 LAKIFDDNTEPANNFPCLPILVNLAKTSPFSKLF 292
+A +FD N E F +P++ KT S ++
Sbjct: 20 MALVFDQNYETVKQFKMIPVVTQRTKTKQVSNVY 53
>Z81114-2|CAB03286.1| 604|Caenorhabditis elegans Hypothetical
protein T04D3.2 protein.
Length = 604
Score = 27.1 bits (57), Expect = 5.9
Identities = 16/48 (33%), Positives = 24/48 (50%)
Frame = +1
Query: 85 VNVALQEVLKTALIHGGVVHGLYEAVKAFDKRQAVLCVLAENCDEVVY 228
V VAL + T LIH +H LY+ K V C+L ++ + +Y
Sbjct: 16 VVVALSDRQYTFLIHS-FIHSLYQHTKRLLFSDFVSCLLPKHLQQAMY 62
>U80839-7|AAB37915.1| 306|Caenorhabditis elegans Hypothetical
protein ZC204.9 protein.
Length = 306
Score = 27.1 bits (57), Expect = 5.9
Identities = 11/44 (25%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = +1
Query: 94 ALQE-VLKTALIHGGVVHGLYEAVKAFDKRQAVLCVLAENCDEV 222
A++E ++ + +HG +VH E + F + +L NC ++
Sbjct: 168 AIKELIVSDSTVHGSIVHWNLEKLSVFSTTMTLDDLLLSNCSDI 211
>U00043-12|AAC77504.2| 613|Caenorhabditis elegans Hypothetical
protein T26A5.1 protein.
Length = 613
Score = 27.1 bits (57), Expect = 5.9
Identities = 10/34 (29%), Positives = 18/34 (52%)
Frame = +2
Query: 260 IRFHWSRVTTTKSLENGLVFARLTRMGRQGKLLA 361
+ HW+ +T T E L+ ++ + G+LLA
Sbjct: 32 VSLHWNNITVTTIKEKRLLLKNVSGYAKSGELLA 65
>Z92806-5|CAB07255.2| 1251|Caenorhabditis elegans Hypothetical
protein K10G4.5 protein.
Length = 1251
Score = 26.6 bits (56), Expect = 7.8
Identities = 22/62 (35%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
Frame = -2
Query: 417 EHIQRWSFLAKIFDDNTEPANNFPCLPILVNLAK-TSPFSKLFVVVTLDQ*NLMFVAQSL 241
E I S L F T P N P + V LAK T P S L + + ++ +L+F S
Sbjct: 757 ESIYEVSLLGWPFRRPTHPNTNHPSMSYAVRLAKPTLPISHLTIRLNENRSSLIF-GTSW 815
Query: 240 NK 235
NK
Sbjct: 816 NK 817
>Z68297-6|CAE45045.1| 302|Caenorhabditis elegans Hypothetical
protein F11A10.8 protein.
Length = 302
Score = 26.6 bits (56), Expect = 7.8
Identities = 25/103 (24%), Positives = 37/103 (35%), Gaps = 2/103 (1%)
Frame = -1
Query: 373 QHRTSQQFSLPSHPCQSCKDQPILQAFCCCHP*PVKSNVRCT--KPEQVSCIRLHHSSQP 200
+HR ++ P++ C P Q P N+ + KP I H+ +
Sbjct: 153 KHRHRRRAVCPNYLAGFCLQGPDCQYAHPSFGLPSFENIAVSHAKPTYSQAITCHNCHER 212
Query: 199 KHIVLLASCQKL*RLRKDRAQHHHGLKLSLAPLAVLHSRPCCY 71
H +C L + HHH + LSL P S CY
Sbjct: 213 GHKA--TTCPHLPGQTRQNQDHHHRVDLSLIPDKKNLSDVTCY 253
>AF068720-3|AAC17786.1| 332|Caenorhabditis elegans Seven tm
receptor protein 243 protein.
Length = 332
Score = 26.6 bits (56), Expect = 7.8
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = +2
Query: 212 VMKSYTRNLFRLCATNIRFHWSRVTTTKS 298
V+KSY +F C R H SR +T S
Sbjct: 304 VIKSYREAIFGCCRKTTRVHASRTSTAAS 332
>AF047655-8|AAC04397.1| 227|Caenorhabditis elegans Hypothetical
protein C17B7.3 protein.
Length = 227
Score = 26.6 bits (56), Expect = 7.8
Identities = 15/61 (24%), Positives = 28/61 (45%)
Frame = +1
Query: 172 DKRQAVLCVLAENCDEVVYKKLVQALCNEH*ISLVKGDNNKKLGEWAGLCKIDKDGKARK 351
D+++A L + + CD VVY A C E + +K +W + + K+ +K
Sbjct: 116 DQKEAALRSIEKYCDAVVYVYSDFAQCREK----LNAKKSKCFDDWDPIPNVHKENDPKK 171
Query: 352 I 354
+
Sbjct: 172 V 172
>AC024772-3|AAF60538.1| 2344|Caenorhabditis elegans Hypothetical
protein Y40C5A.3 protein.
Length = 2344
Score = 26.6 bits (56), Expect = 7.8
Identities = 12/44 (27%), Positives = 25/44 (56%)
Frame = -3
Query: 221 TSSQFSAKTHSTACLLSKALTAS*RPCTTPPWIKAVFSTSCSAT 90
TSS + ++ L ++ +S +P T P WI A++++ S++
Sbjct: 1266 TSSPVLPTSENSRQSLITSIISSGKPATIPDWIMAMYTSQSSSS 1309
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,995,920
Number of Sequences: 27780
Number of extensions: 231807
Number of successful extensions: 714
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 679
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 714
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 735312162
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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