Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5538
         (394 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    25   4.2  
SPAC6G9.13c |bqt1|mug23, rec26|bouquet formation protein Bqt1|Sc...    25   4.2  
SPBC1271.02 |stt3||oligosaccharyltransferase subunit Stt3|Schizo...    25   5.5  
SPAC513.07 |||flavonol reductase/cinnamoyl-CoA reductase family|...    24   7.3  
SPBC29B5.04c |||conserved fungal protein|Schizosaccharomyces pom...    24   9.7  
SPCC1620.11 |mug87||nucleoporin Nic96 homolog|Schizosaccharomyce...    24   9.7  

>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 25.0 bits (52), Expect = 4.2
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -1

Query: 73  PSVCLSPPWQRQPRPTMPPK*PCT 2
           P   L PP    PRP++PP  P +
Sbjct: 133 PQSELRPPTSAPPRPSIPPPSPAS 156


>SPAC6G9.13c |bqt1|mug23, rec26|bouquet formation protein
           Bqt1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 132

 Score = 25.0 bits (52), Expect = 4.2
 Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
 Frame = -1

Query: 310 WQLVSSCRRCFRTRRLHVR--LSCSFRLRNRVLPW 212
           WQ    C+   +   +H+    S +F+LR  VLPW
Sbjct: 65  WQFALLCQGQNKESLIHMEEDASTNFKLRYYVLPW 99


>SPBC1271.02 |stt3||oligosaccharyltransferase subunit
           Stt3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 752

 Score = 24.6 bits (51), Expect = 5.5
 Identities = 10/27 (37%), Positives = 19/27 (70%)
 Frame = +1

Query: 49  KEEKGTPKAVEEKNKDKRGIYDIGIFW 129
           +E+K + +A   K+K+K+GI+ I  F+
Sbjct: 441 EEDKVSEEAASAKSKNKKGIFSILSFF 467


>SPAC513.07 |||flavonol reductase/cinnamoyl-CoA reductase
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 336

 Score = 24.2 bits (50), Expect = 7.3
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = +1

Query: 4   YTVILVASLAVVAFAKEEKGTPKAVEEKNKDKRGIYDI 117
           Y   L     +VA+   +K   +A  E  K+K+  YDI
Sbjct: 153 YEEALTTDNGIVAYCASKKLAEEAAREYVKEKKPSYDI 190


>SPBC29B5.04c |||conserved fungal protein|Schizosaccharomyces
          pombe|chr 2|||Manual
          Length = 605

 Score = 23.8 bits (49), Expect = 9.7
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -3

Query: 74 AFGVPFSSLAKATTANDATKITVY 3
          +FG  F    ++ T ND T IT+Y
Sbjct: 4  SFGRLFRGSEESPTINDLTSITIY 27


>SPCC1620.11 |mug87||nucleoporin Nic96 homolog|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 851

 Score = 23.8 bits (49), Expect = 9.7
 Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
 Frame = -2

Query: 153 RYLRNYV-LPKDTYVIDAPFVLVFLFDCLRCAFL 55
           R LRN V +  D  +I    +  F+F  LRC FL
Sbjct: 306 RLLRNGVWINPDLEIIQDVPIWAFIFYLLRCGFL 339


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,135,933
Number of Sequences: 5004
Number of extensions: 17578
Number of successful extensions: 48
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 48
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 130061696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)