Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-5538
(394 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_1097 - 27570037-27570262,27570575-27570730,27570763-275708... 28 2.3
04_03_0286 + 13915705-13915984,13916478-13917062,13918188-139186... 28 2.3
03_06_0419 - 33789625-33789843,33790884-33791185,33791279-33792248 28 3.1
03_05_0576 + 25765137-25766420 28 3.1
08_02_0796 - 21300251-21300373,21300846-21301721 27 4.1
07_03_0305 - 16475127-16476017,16476058-16478067 27 4.1
04_04_1514 + 34114626-34114637,34114766-34114841,34115022-34115347 27 4.1
11_01_0154 + 1281434-1281725,1281923-1281987,1282112-1282175,128... 27 7.1
03_06_0658 - 35335639-35335731,35335814-35335871,35336213-353363... 27 7.1
01_05_0132 - 18446105-18446197,18446281-18446372,18446684-184467... 27 7.1
09_01_0144 - 2158924-2158962,2159180-2159315,2159393-2159499,215... 26 9.4
07_03_1710 - 28903614-28903673,28904982-28905146,28905453-289056... 26 9.4
07_03_1129 + 24184785-24185561 26 9.4
02_04_0142 + 20167876-20169108 26 9.4
>06_03_1097 -
27570037-27570262,27570575-27570730,27570763-27570881,
27572154-27572236,27574991-27575041,27575218-27575674,
27576139-27576228,27576672-27576701
Length = 403
Score = 28.3 bits (60), Expect = 2.3
Identities = 14/32 (43%), Positives = 16/32 (50%)
Frame = -1
Query: 118 LCHRCPFCPCFSLRLPSVCLSPPWQRQPRPTM 23
L HR P FS R + S WQ+QPR M
Sbjct: 301 LVHRLPQALRFSNRFSCILSSARWQQQPRDGM 332
>04_03_0286 +
13915705-13915984,13916478-13917062,13918188-13918661,
13918963-13920208,13920282-13920297
Length = 866
Score = 28.3 bits (60), Expect = 2.3
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = +3
Query: 9 GYFGGIVGRGCLCQGG 56
GYF I+G CLC GG
Sbjct: 258 GYFAPILGYNCLCDGG 273
>03_06_0419 - 33789625-33789843,33790884-33791185,33791279-33792248
Length = 496
Score = 27.9 bits (59), Expect = 3.1
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +1
Query: 40 AFAKEEKGTPKAVEEKNKDKRGIYDIGI 123
+FA ++KG K EE +K RG+ D+ I
Sbjct: 452 SFAYKQKGKCKVHEEGSKSDRGVQDLSI 479
>03_05_0576 + 25765137-25766420
Length = 427
Score = 27.9 bits (59), Expect = 3.1
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = -1
Query: 70 SVCLSPPWQRQPRPTMPP 17
+V +SPP Q +PRP +PP
Sbjct: 98 AVSVSPPTQPRPRPELPP 115
>08_02_0796 - 21300251-21300373,21300846-21301721
Length = 332
Score = 27.5 bits (58), Expect = 4.1
Identities = 15/37 (40%), Positives = 16/37 (43%), Gaps = 3/37 (8%)
Frame = -1
Query: 109 RCPFCPC---FSLRLPSVCLSPPWQRQPRPTMPPK*P 8
+C C C F RLP SPP P P PP P
Sbjct: 76 KCAACGCHRNFHRRLPEAPPSPPLLALPPPPPPPPPP 112
>07_03_0305 - 16475127-16476017,16476058-16478067
Length = 966
Score = 27.5 bits (58), Expect = 4.1
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = -1
Query: 58 SPPWQRQPRPTMPPK*PC 5
SPP Q P P +PP PC
Sbjct: 26 SPPPQTAPAPALPPSNPC 43
>04_04_1514 + 34114626-34114637,34114766-34114841,34115022-34115347
Length = 137
Score = 27.5 bits (58), Expect = 4.1
Identities = 15/27 (55%), Positives = 16/27 (59%)
Frame = +1
Query: 22 ASLAVVAFAKEEKGTPKAVEEKNKDKR 102
ASL V AKEEK K EEK DK+
Sbjct: 65 ASLLSVGPAKEEKKEEKKPEEKKDDKK 91
>11_01_0154 +
1281434-1281725,1281923-1281987,1282112-1282175,
1282303-1282449,1282583-1282677,1284358-1284465
Length = 256
Score = 26.6 bits (56), Expect = 7.1
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = -1
Query: 73 PSVCLSPPWQRQPRPTMPPK*PCT 2
PS+ S P R+P +PP PC+
Sbjct: 8 PSLLFSSPTPRRPSSCLPPPPPCS 31
>03_06_0658 -
35335639-35335731,35335814-35335871,35336213-35336355,
35336624-35336703,35336916-35337075,35337531-35337668,
35338487-35338567,35338640-35338693,35339192-35339297,
35339615-35339682,35340076-35340225,35340401-35340519,
35341151-35341362,35342118-35342205,35342365-35342479,
35343083-35343274,35343809-35344018
Length = 688
Score = 26.6 bits (56), Expect = 7.1
Identities = 16/45 (35%), Positives = 20/45 (44%)
Frame = -1
Query: 349 RGVHHARGGSRLRWQLVSSCRRCFRTRRLHVRLSCSFRLRNRVLP 215
RG HH R G LR ++ T VR CS L + +LP
Sbjct: 45 RGRHHHRRGGVLRCDAAAASPSAGSTLENPVRRKCSPLLESALLP 89
>01_05_0132 -
18446105-18446197,18446281-18446372,18446684-18446783,
18446855-18447046,18447216-18447536,18447848-18447943,
18448006-18448098,18448181-18448306,18448358-18449053,
18449130-18449162
Length = 613
Score = 26.6 bits (56), Expect = 7.1
Identities = 12/37 (32%), Positives = 23/37 (62%)
Frame = -2
Query: 183 HSFRDRRSLHRYLRNYVLPKDTYVIDAPFVLVFLFDC 73
++FR R +LH+ +N+V +VI+ +V++ F C
Sbjct: 400 NTFR-RHALHKCFKNFVTQHFIFVIEINWVVIAEFTC 435
>09_01_0144 -
2158924-2158962,2159180-2159315,2159393-2159499,
2159594-2160055,2162755-2162836,2164222-2164346,
2164555-2164623,2164935-2165056,2165823-2165856
Length = 391
Score = 26.2 bits (55), Expect = 9.4
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = -1
Query: 91 CFSLRLPSVCLSPPWQRQPRPTMPPK*PC 5
C SL + + CL+P +PRP+ PC
Sbjct: 210 CNSLNMEASCLNPWGWMKPRPSEQKSLPC 238
>07_03_1710 -
28903614-28903673,28904982-28905146,28905453-28905638,
28905784-28905927,28906281-28906460,28906559-28907215
Length = 463
Score = 26.2 bits (55), Expect = 9.4
Identities = 9/13 (69%), Positives = 10/13 (76%)
Frame = -1
Query: 55 PPWQRQPRPTMPP 17
PP Q+QPRP PP
Sbjct: 84 PPQQQQPRPVSPP 96
>07_03_1129 + 24184785-24185561
Length = 258
Score = 26.2 bits (55), Expect = 9.4
Identities = 16/39 (41%), Positives = 19/39 (48%)
Frame = +3
Query: 24 IVGRGCLCQGGERHTEGSRREKQGQKGHL*HRYLLVGHN 140
I+ RGC GG R G E + L HR LVGH+
Sbjct: 155 ILARGCAGGGGGRGLVGVLVEGLERPEPLLHRQELVGHH 193
>02_04_0142 + 20167876-20169108
Length = 410
Score = 26.2 bits (55), Expect = 9.4
Identities = 11/35 (31%), Positives = 18/35 (51%)
Frame = -1
Query: 325 GSRLRWQLVSSCRRCFRTRRLHVRLSCSFRLRNRV 221
G RL +L R+ ++ LH CS+ RN++
Sbjct: 193 GMRLSGKLKEEARKHLNSKHLHYEEMCSYHNRNKM 227
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,116,359
Number of Sequences: 37544
Number of extensions: 147411
Number of successful extensions: 526
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 510
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 526
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 672845152
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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