Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-5538
(394 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U80847-2|AAB37982.2| 475|Caenorhabditis elegans Hypothetical pr... 27 4.8
U80437-4|AAK68244.1| 90|Caenorhabditis elegans Neurabin protei... 27 4.8
U80437-3|AAK68243.1| 561|Caenorhabditis elegans Neurabin protei... 27 4.8
U80437-2|AAL16317.1| 658|Caenorhabditis elegans Neurabin protei... 27 4.8
U80437-1|AAB37620.1| 721|Caenorhabditis elegans Neurabin protei... 27 4.8
U39852-7|AAK39260.1| 240|Caenorhabditis elegans Ground-like (gr... 27 4.8
Z46937-5|CAA87057.1| 376|Caenorhabditis elegans Hypothetical pr... 26 8.4
Z46937-2|CAB60996.1| 444|Caenorhabditis elegans Hypothetical pr... 26 8.4
U41010-2|AAF98588.1| 585|Caenorhabditis elegans Trehalase prote... 26 8.4
U40957-3|ABC71815.1| 207|Caenorhabditis elegans Hypothetical pr... 26 8.4
U27124-1|AAA73482.1| 376|Caenorhabditis elegans MPK-1 protein. 26 8.4
U03879-1|AAA18956.1| 444|Caenorhabditis elegans Sur-1 MAP kinas... 26 8.4
AJ512334-1|CAD54508.2| 585|Caenorhabditis elegans trehalase pro... 26 8.4
AF016430-2|AAB65371.1| 1106|Caenorhabditis elegans Gex interacti... 26 8.4
>U80847-2|AAB37982.2| 475|Caenorhabditis elegans Hypothetical
protein C17H11.1 protein.
Length = 475
Score = 27.1 bits (57), Expect = 4.8
Identities = 14/29 (48%), Positives = 19/29 (65%)
Frame = -2
Query: 138 YVLPKDTYVIDAPFVLVFLFDCLRCAFLL 52
+V+ TY I+APF+ FL L C+FLL
Sbjct: 116 FVMYYTTY-IEAPFINGFLISGLYCSFLL 143
>U80437-4|AAK68244.1| 90|Caenorhabditis elegans Neurabin protein
1, isoform c protein.
Length = 90
Score = 27.1 bits (57), Expect = 4.8
Identities = 11/17 (64%), Positives = 12/17 (70%)
Frame = -1
Query: 58 SPPWQRQPRPTMPPK*P 8
SP QRQP P +PPK P
Sbjct: 37 SPRLQRQPPPPLPPKPP 53
>U80437-3|AAK68243.1| 561|Caenorhabditis elegans Neurabin protein
1, isoform b protein.
Length = 561
Score = 27.1 bits (57), Expect = 4.8
Identities = 11/17 (64%), Positives = 12/17 (70%)
Frame = -1
Query: 58 SPPWQRQPRPTMPPK*P 8
SP QRQP P +PPK P
Sbjct: 37 SPRLQRQPPPPLPPKPP 53
>U80437-2|AAL16317.1| 658|Caenorhabditis elegans Neurabin protein
1, isoform d protein.
Length = 658
Score = 27.1 bits (57), Expect = 4.8
Identities = 11/17 (64%), Positives = 12/17 (70%)
Frame = -1
Query: 58 SPPWQRQPRPTMPPK*P 8
SP QRQP P +PPK P
Sbjct: 37 SPRLQRQPPPPLPPKPP 53
>U80437-1|AAB37620.1| 721|Caenorhabditis elegans Neurabin protein
1, isoform a protein.
Length = 721
Score = 27.1 bits (57), Expect = 4.8
Identities = 11/17 (64%), Positives = 12/17 (70%)
Frame = -1
Query: 58 SPPWQRQPRPTMPPK*P 8
SP QRQP P +PPK P
Sbjct: 37 SPRLQRQPPPPLPPKPP 53
>U39852-7|AAK39260.1| 240|Caenorhabditis elegans Ground-like (grd
related) protein 6 protein.
Length = 240
Score = 27.1 bits (57), Expect = 4.8
Identities = 16/43 (37%), Positives = 18/43 (41%)
Frame = -1
Query: 133 PTKRYLCHRCPFCPCFSLRLPSVCLSPPWQRQPRPTMPPK*PC 5
P R C CP P R+P C +P P P PP PC
Sbjct: 21 PFGRGGCGGCP-TPMCQPRMP--CAAPMPMPMPMPVCPPPPPC 60
Score = 27.1 bits (57), Expect = 4.8
Identities = 14/42 (33%), Positives = 16/42 (38%)
Frame = -1
Query: 133 PTKRYLCHRCPFCPCFSLRLPSVCLSPPWQRQPRPTMPPK*P 8
P +C P CP P +C PP P P PP P
Sbjct: 48 PMPMPVCPPPPPCPAQFCPPPPICPPPPPPPMPCPPPPPPMP 89
>Z46937-5|CAA87057.1| 376|Caenorhabditis elegans Hypothetical
protein F43C1.2a protein.
Length = 376
Score = 26.2 bits (55), Expect = 8.4
Identities = 13/29 (44%), Positives = 14/29 (48%)
Frame = -2
Query: 156 HRYLRNYVLPKDTYVIDAPFVLVFLFDCL 70
H YL Y P D V + PF L FD L
Sbjct: 313 HPYLEQYYDPGDEPVCEEPFTLEMEFDDL 341
>Z46937-2|CAB60996.1| 444|Caenorhabditis elegans Hypothetical
protein F43C1.2b protein.
Length = 444
Score = 26.2 bits (55), Expect = 8.4
Identities = 13/29 (44%), Positives = 14/29 (48%)
Frame = -2
Query: 156 HRYLRNYVLPKDTYVIDAPFVLVFLFDCL 70
H YL Y P D V + PF L FD L
Sbjct: 381 HPYLEQYYDPGDEPVCEEPFTLEMEFDDL 409
>U41010-2|AAF98588.1| 585|Caenorhabditis elegans Trehalase protein
2 protein.
Length = 585
Score = 26.2 bits (55), Expect = 8.4
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = -1
Query: 325 GSRLRWQLVSSCRRC 281
GS++RWQ+ SC C
Sbjct: 522 GSKIRWQVAESCECC 536
>U40957-3|ABC71815.1| 207|Caenorhabditis elegans Hypothetical
protein R02E4.2 protein.
Length = 207
Score = 26.2 bits (55), Expect = 8.4
Identities = 11/32 (34%), Positives = 15/32 (46%)
Frame = -1
Query: 391 QQAPFFPPHQFSCARGVHHARGGSRLRWQLVS 296
QQ PF P S HH +RL W +++
Sbjct: 124 QQRPFLPRQVLSDILQKHHQEIANRLGWHIIA 155
>U27124-1|AAA73482.1| 376|Caenorhabditis elegans MPK-1 protein.
Length = 376
Score = 26.2 bits (55), Expect = 8.4
Identities = 13/29 (44%), Positives = 14/29 (48%)
Frame = -2
Query: 156 HRYLRNYVLPKDTYVIDAPFVLVFLFDCL 70
H YL Y P D V + PF L FD L
Sbjct: 313 HPYLEQYYDPGDEPVCEEPFTLEMEFDDL 341
>U03879-1|AAA18956.1| 444|Caenorhabditis elegans Sur-1 MAP kinase
protein.
Length = 444
Score = 26.2 bits (55), Expect = 8.4
Identities = 13/29 (44%), Positives = 14/29 (48%)
Frame = -2
Query: 156 HRYLRNYVLPKDTYVIDAPFVLVFLFDCL 70
H YL Y P D V + PF L FD L
Sbjct: 381 HPYLEQYYDPGDEPVCEEPFTLEMEFDDL 409
>AJ512334-1|CAD54508.2| 585|Caenorhabditis elegans trehalase
protein.
Length = 585
Score = 26.2 bits (55), Expect = 8.4
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = -1
Query: 325 GSRLRWQLVSSCRRC 281
GS++RWQ+ SC C
Sbjct: 522 GSKIRWQVAESCECC 536
>AF016430-2|AAB65371.1| 1106|Caenorhabditis elegans Gex interacting
protein protein 6 protein.
Length = 1106
Score = 26.2 bits (55), Expect = 8.4
Identities = 8/14 (57%), Positives = 11/14 (78%)
Frame = -1
Query: 58 SPPWQRQPRPTMPP 17
+PPWQR +P+ PP
Sbjct: 947 APPWQRSRQPSPPP 960
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,534,477
Number of Sequences: 27780
Number of extensions: 109882
Number of successful extensions: 380
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 364
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 377
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 598330768
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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