Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5536
         (717 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0483 - 34226496-34226864,34227140-34227360,34227677-342279...    31   1.2  
01_03_0270 + 14445240-14445464,14445490-14445655,14446193-144463...    28   6.4  
08_01_0002 - 20208-20594,21525-21671,21754-21917,22005-22162,245...    28   8.5  

>03_06_0483 -
           34226496-34226864,34227140-34227360,34227677-34227933,
           34228388-34228483,34228660-34228805,34229774-34229977
          Length = 430

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 13/33 (39%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
 Frame = -2

Query: 326 ISRTLKWRWTGHILR-EKYEKWTKIITEWHPRD 231
           + +T++WR T HIL   + EKW+ ++  WH  D
Sbjct: 173 VKKTIRWRETFHILTLHELEKWSHLVF-WHGFD 204


>01_03_0270 +
           14445240-14445464,14445490-14445655,14446193-14446341,
           14446634-14446674,14447683-14447755
          Length = 217

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 18/73 (24%), Positives = 32/73 (43%)
 Frame = -2

Query: 398 GVKRRDKVRLSEIKRFTKFKNAIKISRTLKWRWTGHILREKYEKWTKIITEWHPRDGCRK 219
           G+K   K+ + EI+     K  I +   LKW    H  + +Y   +  ++ W P    R 
Sbjct: 92  GIKELAKMPMEEIEADKLSKEDIDVR--LKWLGLFHPRKHQYRPDSVALSSWPPDLRRRG 149

Query: 218 KGRQPKRWEDEIK 180
           + + P  W D ++
Sbjct: 150 EWQGPGGWWDPVR 162


>08_01_0002 -
           20208-20594,21525-21671,21754-21917,22005-22162,
           24533-24826,24916-25121,25216-25812,26366-27097
          Length = 894

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = +3

Query: 171 GYTLYFIFPTFWLSSFFSTAIPWMPLCNYFSPFFVFLS 284
           G T+Y      + SSF STA+ W+  C Y     +F S
Sbjct: 402 GETIYQKLELLFASSFASTALHWLIGCIYLMLLSIFSS 439


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,441,583
Number of Sequences: 37544
Number of extensions: 318998
Number of successful extensions: 792
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 767
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 792
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1862792824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)