Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5536
         (717 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC103567-9|AAL35735.1|  204|Caenorhabditis elegans Hypothetical ...    61   9e-10
AC087794-3|AAG53700.1|  417|Caenorhabditis elegans Hypothetical ...    61   9e-10
U58735-1|AAC48148.1|  891|Caenorhabditis elegans Hypothetical pr...    60   2e-09
AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse trans...    60   2e-09
AF025462-7|AAB71003.1|  805|Caenorhabditis elegans Hypothetical ...    60   2e-09
U88178-6|ABA03112.1|  312|Caenorhabditis elegans Hypothetical pr...    44   8e-05
U21324-7|AAA62566.1|  265|Caenorhabditis elegans Hypothetical pr...    30   1.4  
Z82278-9|CAE17877.1|  323|Caenorhabditis elegans Hypothetical pr...    28   7.7  
Z82070-8|CAE17980.1|  323|Caenorhabditis elegans Hypothetical pr...    28   7.7  
Z81492-5|CAB04024.1|  368|Caenorhabditis elegans Hypothetical pr...    28   7.7  
Z78416-5|CAB01681.1| 1137|Caenorhabditis elegans Hypothetical pr...    28   7.7  

>AC103567-9|AAL35735.1|  204|Caenorhabditis elegans Hypothetical
           protein Y51F10.8 protein.
          Length = 204

 Score = 60.9 bits (141), Expect = 9e-10
 Identities = 27/102 (26%), Positives = 51/102 (50%), Gaps = 4/102 (3%)
 Frame = -2

Query: 473 WPFNSNTD*LNKIQVCQNSIERSVTGV----KRRDKVRLSEIKRFTKFKNAIKISRTLKW 306
           W F      + +++V   ++ER + G+    +R   +   E++  +K ++ +   +  K 
Sbjct: 66  WTFTKEL--VERVRVTHAALERKLVGLTLTEQRERNIHREEVREKSKLRDPLIHIKKRKL 123

Query: 305 RWTGHILREKYEKWTKIITEWHPRDGCRKKGRQPKRWEDEIK 180
            W GH+ R    +WT ++ +W PRD  R  GR P RW D ++
Sbjct: 124 GWAGHVARRTDGRWTTLMNDWCPRDEKRPVGRPPMRWNDSLR 165


>AC087794-3|AAG53700.1|  417|Caenorhabditis elegans Hypothetical
           protein Y32G9A.9 protein.
          Length = 417

 Score = 60.9 bits (141), Expect = 9e-10
 Identities = 25/91 (27%), Positives = 48/91 (52%), Gaps = 4/91 (4%)
 Frame = -2

Query: 440 KIQVCQNSIERSVTGV----KRRDKVRLSEIKRFTKFKNAIKISRTLKWRWTGHILREKY 273
           ++++   S+ER + G+    +R   +   +I++ +  ++ +   +  K  W GH+ R K 
Sbjct: 290 RVRITHASLERRLVGITLTQQRERDLHREDIRKMSLVRDPLNFVKKRKLGWAGHVARRKD 349

Query: 272 EKWTKIITEWHPRDGCRKKGRQPKRWEDEIK 180
            +WT ++TEW P    R  GR P RW D ++
Sbjct: 350 GRWTTLMTEWRPYGWKRPVGRPPMRWTDSLR 380


>U58735-1|AAC48148.1|  891|Caenorhabditis elegans Hypothetical protein
            F20B4.7 protein.
          Length = 891

 Score = 59.7 bits (138), Expect = 2e-09
 Identities = 25/91 (27%), Positives = 47/91 (51%), Gaps = 4/91 (4%)
 Frame = -2

Query: 440  KIQVCQNSIERSVTGV----KRRDKVRLSEIKRFTKFKNAIKISRTLKWRWTGHILREKY 273
            ++++   S+ER + G+    +R   +   +I+  +  ++ +   +  K  W GH+ R K 
Sbjct: 764  RVRITHASLERRLVGITLTQQRERDLHREDIRTMSLVRDPLNFVKKRKLGWAGHVARRKD 823

Query: 272  EKWTKIITEWHPRDGCRKKGRQPKRWEDEIK 180
             +WT ++TEW P    R  GR P RW D ++
Sbjct: 824  GRWTTLMTEWRPYGWKRPVGRPPMRWTDSLR 854


>AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse
            transcriptase protein.
          Length = 1066

 Score = 59.7 bits (138), Expect = 2e-09
 Identities = 25/91 (27%), Positives = 47/91 (51%), Gaps = 4/91 (4%)
 Frame = -2

Query: 440  KIQVCQNSIERSVTGV----KRRDKVRLSEIKRFTKFKNAIKISRTLKWRWTGHILREKY 273
            ++++   S+ER + G+    +R   +   +I+  +  ++ +   +  K  W GH+ R K 
Sbjct: 939  RVRITHASLERRLVGITLTQQRERDLHREDIRTMSLVRDPLNFVKKRKLGWAGHVARRKD 998

Query: 272  EKWTKIITEWHPRDGCRKKGRQPKRWEDEIK 180
             +WT ++TEW P    R  GR P RW D ++
Sbjct: 999  GRWTTLMTEWRPYGWKRPVGRPPMRWTDSLR 1029


>AF025462-7|AAB71003.1|  805|Caenorhabditis elegans Hypothetical
           protein K10F12.5 protein.
          Length = 805

 Score = 59.7 bits (138), Expect = 2e-09
 Identities = 25/91 (27%), Positives = 47/91 (51%), Gaps = 4/91 (4%)
 Frame = -2

Query: 440 KIQVCQNSIERSVTGV----KRRDKVRLSEIKRFTKFKNAIKISRTLKWRWTGHILREKY 273
           ++++   S+ER + G+    +R   +   +I+  +  ++ +   +  K  W GH+ R K 
Sbjct: 678 RVRITHASLERRLVGITLTQQRERDLHREDIRTMSLVRDPLNFVKKRKLGWAGHVARRKD 737

Query: 272 EKWTKIITEWHPRDGCRKKGRQPKRWEDEIK 180
            +WT ++TEW P    R  GR P RW D ++
Sbjct: 738 GRWTTLMTEWRPYGWKRPVGRPPMRWTDSLR 768


>U88178-6|ABA03112.1|  312|Caenorhabditis elegans Hypothetical
           protein W09C3.8 protein.
          Length = 312

 Score = 44.4 bits (100), Expect = 8e-05
 Identities = 21/44 (47%), Positives = 26/44 (59%), Gaps = 3/44 (6%)
 Frame = -2

Query: 305 RWTGHILREKYEKWTKIITEW---HPRDGCRKKGRQPKRWEDEI 183
           R+ GHILR    +WTKI TEW   H ++  R  G Q KRW  +I
Sbjct: 215 RFAGHILRRDPNRWTKICTEWDPSHNKNWKRAVGGQKKRWAKDI 258


>U21324-7|AAA62566.1|  265|Caenorhabditis elegans Hypothetical
           protein C35D10.10 protein.
          Length = 265

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +3

Query: 198 TFWLSSFFSTAIPWMPLCNYFSPFFVFLS*DMSCPS 305
           T W+  FF+T   W P C + SP F  LS   + P+
Sbjct: 145 TIWVIQFFTT---WSPECRHTSPVFAELSQKFTLPN 177


>Z82278-9|CAE17877.1|  323|Caenorhabditis elegans Hypothetical
           protein W04E12.9 protein.
          Length = 323

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 10/28 (35%), Positives = 19/28 (67%)
 Frame = +2

Query: 188 HLPNVLAVFLFFYSHPVDATL*LF*SIF 271
           +LP++ ++FL+FY HP    L ++  +F
Sbjct: 3   YLPSLPSLFLYFYDHPSSHNLYIYLHLF 30


>Z82070-8|CAE17980.1|  323|Caenorhabditis elegans Hypothetical
           protein W04E12.9 protein.
          Length = 323

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 10/28 (35%), Positives = 19/28 (67%)
 Frame = +2

Query: 188 HLPNVLAVFLFFYSHPVDATL*LF*SIF 271
           +LP++ ++FL+FY HP    L ++  +F
Sbjct: 3   YLPSLPSLFLYFYDHPSSHNLYIYLHLF 30


>Z81492-5|CAB04024.1|  368|Caenorhabditis elegans Hypothetical
           protein E03H4.8 protein.
          Length = 368

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
 Frame = +2

Query: 404 HFFLCCSDIP-VFYSVSQYWS*MAKNREYWQSLE 502
           HFF+ C D   + Y+  QY +   K R Y Q LE
Sbjct: 74  HFFMACGDGKYIVYTYKQYDAIALKIRHYGQGLE 107


>Z78416-5|CAB01681.1| 1137|Caenorhabditis elegans Hypothetical protein
            C23H4.6 protein.
          Length = 1137

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 22/63 (34%), Positives = 28/63 (44%), Gaps = 4/63 (6%)
 Frame = +2

Query: 419  CSDIPVFYSVSQYWS*MAKNREYWQSLEEAFVERQAV----LKTTPNAERNTCL*VAVKF 586
            C D     SV ++   + K RE  + LEE   E Q V    LK  P  ++ T L V  KF
Sbjct: 913  CGDTVTIGSVKEFKENLKKLRESCRMLEEVVEEMQTVHNGRLKAYPTLKKYTELKVTDKF 972

Query: 587  NLL 595
              L
Sbjct: 973  KEL 975


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,941,050
Number of Sequences: 27780
Number of extensions: 318990
Number of successful extensions: 840
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 814
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 840
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1676746902
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)