Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5535
         (585 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    27   2.0  
SPAC2F3.11 |||exopolyphosphatase |Schizosaccharomyces pombe|chr ...    26   4.7  
SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subuni...    25   6.2  
SPBC530.12c |pdf1||palmitoyl protein thioesterase-dolichol pyrop...    25   6.2  
SPAC27D7.07c |smd1||Sm snRNP core protein Smd1|Schizosaccharomyc...    25   6.2  

>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = -2

Query: 539  FFFEGNYCVSVRNNTEYILMLSLELLVISRFL 444
            FFF   +C S+    E +L  +++LL++ +FL
Sbjct: 1831 FFFPLEHCSSLNFAKENLLRTNVKLLIVDKFL 1862


>SPAC2F3.11 |||exopolyphosphatase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 384

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +1

Query: 301 CYLICYYFLPYLLKLHD 351
           C L+C YF+P +  L+D
Sbjct: 160 CTLVCRYFMPVIRSLYD 176


>SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subunit a
            Pol2 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2199

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = +2

Query: 8    SISFVINGLFFFLYGDTYWPGLSHRGC 88
            SI F++N  FF  + D   P +   GC
Sbjct: 1323 SIRFIVNRKFFVCFKDETLPNVEIEGC 1349


>SPBC530.12c |pdf1||palmitoyl protein thioesterase-dolichol
           pyrophosphate phosphatase fusion 1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 603

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 8/12 (66%), Positives = 12/12 (100%)
 Frame = -3

Query: 553 PPLEFFFLKETI 518
           PPL+FF++K+TI
Sbjct: 569 PPLQFFYIKDTI 580


>SPAC27D7.07c |smd1||Sm snRNP core protein Smd1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 117

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = +1

Query: 310 ICYYFLPYLLKLHDLIEISTTKPKNDK 390
           I YY LP  L L  L+   +TKPK  K
Sbjct: 65  IRYYILPDSLPLDTLLIDDSTKPKQKK 91


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,480,987
Number of Sequences: 5004
Number of extensions: 51307
Number of successful extensions: 120
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 252150250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)