Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5535
         (585 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0783 - 24546403-24546765,24547202-24547262,24547899-245480...    30   1.2  
06_03_0785 - 24563310-24565004,24565302-24565384,24565484-245660...    28   4.8  
09_02_0384 - 8294914-8297817                                           28   6.3  
04_04_0676 - 27187778-27188316,27188441-27188530,27189249-271894...    28   6.3  
06_03_0784 - 24557089-24557198,24557296-24560725                       27   8.3  

>06_03_0783 -
           24546403-24546765,24547202-24547262,24547899-24548004,
           24548118-24551600,24553134-24553179
          Length = 1352

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 11/27 (40%), Positives = 20/27 (74%)
 Frame = +2

Query: 437 RVIENGLSPEVPVITLIYIPYYSVPKH 517
           RV++NGLS E  ++T++ + Y  +P+H
Sbjct: 451 RVLKNGLSNEKDIMTILRLSYECLPEH 477


>06_03_0785 -
           24563310-24565004,24565302-24565384,24565484-24566039,
           24566397-24566513,24566565-24567131,24568632-24568702,
           24569833-24569903,24570270-24570441,24571229-24572212,
           24573128-24574808
          Length = 1998

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 10/27 (37%), Positives = 20/27 (74%)
 Frame = +2

Query: 437 RVIENGLSPEVPVITLIYIPYYSVPKH 517
           RV+++GLS E  ++T++ + Y  +P+H
Sbjct: 416 RVLKSGLSNEKDIMTILRLSYECLPEH 442


>09_02_0384 - 8294914-8297817
          Length = 967

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 16/52 (30%), Positives = 29/52 (55%), Gaps = 5/52 (9%)
 Frame = +2

Query: 383 TIKLQEVVT--NVRISFASQRV---IENGLSPEVPVITLIYIPYYSVPKHNS 523
           ++KLQ  VT  N R+    + +   ++NG  PE  +  L Y+ ++ +PK +S
Sbjct: 712 SLKLQSTVTVVNFRMCLGVEELSIELDNGQDPEKSIPQLEYLTFWRLPKLSS 763


>04_04_0676 -
           27187778-27188316,27188441-27188530,27189249-27189480,
           27189569-27189899,27190369-27190591,27190772-27191132
          Length = 591

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 16/42 (38%), Positives = 21/42 (50%)
 Frame = -2

Query: 497 TEYILMLSLELLVISRFLLLAGKRNLCARLLLLPVTLSFLGF 372
           T  +  L    L+  R+  L   R+L   L LL +TLS LGF
Sbjct: 436 TLLVFYLVANALIYHRYAKLGANRSLHVLLFLLILTLSSLGF 477


>06_03_0784 - 24557089-24557198,24557296-24560725
          Length = 1179

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = +2

Query: 437 RVIENGLSPEVPVITLIYIPYYSVPKH 517
           RV+  GLS E  ++T++ + Y  +P+H
Sbjct: 416 RVLNKGLSNEKDIMTILRLSYECLPEH 442


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,353,677
Number of Sequences: 37544
Number of extensions: 298135
Number of successful extensions: 732
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 714
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 732
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1376330256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)