Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5535
         (585 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL021483-2|CAA16345.1|  308|Caenorhabditis elegans Hypothetical ...    33   0.15 
U58754-7|AAB00674.1|  308|Caenorhabditis elegans Hypothetical pr...    32   0.26 
AF026213-9|AAB71302.2|  615|Caenorhabditis elegans Protein kinas...    31   0.80 
Z69361-1|CAE17943.1|  468|Caenorhabditis elegans Hypothetical pr...    29   2.4  
Z83246-2|CAB05841.1|  292|Caenorhabditis elegans Hypothetical pr...    28   5.6  
Z99281-19|CAD56260.1|  317|Caenorhabditis elegans Hypothetical p...    27   7.4  
AY572975-1|AAT77228.1|  580|Caenorhabditis elegans KQT-3 potassi...    27   9.8  
AL032648-2|CAA21699.2|  621|Caenorhabditis elegans Hypothetical ...    27   9.8  
AC024801-9|AAF59653.3|  791|Caenorhabditis elegans Hypothetical ...    27   9.8  

>AL021483-2|CAA16345.1|  308|Caenorhabditis elegans Hypothetical
           protein Y38H8A.3 protein.
          Length = 308

 Score = 33.1 bits (72), Expect = 0.15
 Identities = 19/53 (35%), Positives = 28/53 (52%)
 Frame = -2

Query: 575 IGRIGYRAPPRVFFFEGNYCVSVRNNTEYILMLSLELLVISRFLLLAGKRNLC 417
           +G  G+ A  RVF   G Y + V    E I +L LE+ V+++ L   G R+ C
Sbjct: 23  LGEGGFGAVYRVFDATGKYAMKVEGANEQIQVLKLEVSVLNK-LSKRGNRHFC 74


>U58754-7|AAB00674.1|  308|Caenorhabditis elegans Hypothetical
           protein C39H7.1 protein.
          Length = 308

 Score = 32.3 bits (70), Expect = 0.26
 Identities = 19/53 (35%), Positives = 27/53 (50%)
 Frame = -2

Query: 575 IGRIGYRAPPRVFFFEGNYCVSVRNNTEYILMLSLELLVISRFLLLAGKRNLC 417
           +G  G+ A  RVF   G Y + V    E I +L LE+ V++  L   G R+ C
Sbjct: 23  LGEGGFGAVYRVFDATGKYAMKVEGANEQIQVLKLEVSVLNE-LSKRGNRHFC 74


>AF026213-9|AAB71302.2|  615|Caenorhabditis elegans Protein kinase
           protein 9, isoform b protein.
          Length = 615

 Score = 30.7 bits (66), Expect = 0.80
 Identities = 16/34 (47%), Positives = 18/34 (52%)
 Frame = +2

Query: 422 SFASQRVIENGLSPEVPVITLIYIPYYSVPKHNS 523
           S+ASQ      L PE P   L Y PYY   KH+S
Sbjct: 132 SWASQYAPYPTLPPEHPTTPLYYDPYYGGDKHSS 165


>Z69361-1|CAE17943.1|  468|Caenorhabditis elegans Hypothetical
           protein T13H10.2 protein.
          Length = 468

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 28/87 (32%), Positives = 42/87 (48%), Gaps = 5/87 (5%)
 Frame = +1

Query: 274 PRFACRYFICYLICYYFLPYLLKLHDLIEISTTKPKNDKVT-----GSSNKRAHKFRFPA 438
           P     YF+C +I Y+F+ + +  H   E    KP+N +VT      +SN+ +  F F +
Sbjct: 37  PLHTLNYFLCVIIFYFFV-FTIFYH---ERYGGKPENVQVTSAIYDSNSNELSLIFLFDS 92

Query: 439 SNRKRLITRSSSDNINIYSVLFRTETQ 519
           S R+R I      N +  S   R ETQ
Sbjct: 93  SIRRREIFLGFGPNDSKTS---RNETQ 116


>Z83246-2|CAB05841.1|  292|Caenorhabditis elegans Hypothetical
           protein ZK795.3 protein.
          Length = 292

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
 Frame = +1

Query: 418 HKFRFPASNRKRLITRSSS-DNINIYSVLFRTETQ*FPSKKKTRGGARYPIRP 573
           H F  P  + KR+IT S+S D I+    +++TE       + T  G R+ ++P
Sbjct: 200 HLFPVPKPDSKRIITFSNSEDYISFRHHVYKTEND--GEVELTEAGPRFELKP 250


>Z99281-19|CAD56260.1|  317|Caenorhabditis elegans Hypothetical
           protein Y57G11C.38 protein.
          Length = 317

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 10/14 (71%), Positives = 11/14 (78%)
 Frame = -2

Query: 530 EGNYCVSVRNNTEY 489
           +GNYCVSVR  T Y
Sbjct: 159 QGNYCVSVRGQTPY 172


>AY572975-1|AAT77228.1|  580|Caenorhabditis elegans KQT-3 potassium
           channel protein.
          Length = 580

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 12/46 (26%), Positives = 22/46 (47%)
 Frame = -1

Query: 165 EFRTARHWSSVAHANDLAGNSLMRL*HPRCDKPGQYVSPYKKKNNP 28
           E +   HW+   HA+ +  N+L R       K    V+ +++K +P
Sbjct: 315 ETKETHHWNGKKHASSMDSNNLTRK-RQLFKKQSSLVNTFRRKGSP 359


>AL032648-2|CAA21699.2|  621|Caenorhabditis elegans Hypothetical
           protein Y54G9A.3 protein.
          Length = 621

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 12/46 (26%), Positives = 22/46 (47%)
 Frame = -1

Query: 165 EFRTARHWSSVAHANDLAGNSLMRL*HPRCDKPGQYVSPYKKKNNP 28
           E +   HW+   HA+ +  N+L R       K    V+ +++K +P
Sbjct: 356 ETKETHHWNGKKHASSMDSNNLTRK-RQLFKKQSSLVNTFRRKGSP 400


>AC024801-9|AAF59653.3|  791|Caenorhabditis elegans Hypothetical
           protein Y50D7A.1 protein.
          Length = 791

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = +3

Query: 201 RTSVAMFFVK*HANMYYSFYSTIPTSV-CLPIFYLLSNLLLFFAIP 335
           +TS    F K  A+ ++ F+S    S  CL IF+ +S +  FF  P
Sbjct: 599 KTSNIQIFSK-IASFFFEFFSDFCDSYSCLKIFFRISRIFTFFYNP 643


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,741,746
Number of Sequences: 27780
Number of extensions: 289530
Number of successful extensions: 841
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 764
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 841
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1226509528
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)