Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5535
         (585 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    23   1.7  
AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength rhodo...    23   1.7  
AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    21   8.9  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    21   8.9  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    21   8.9  

>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +1

Query: 292 YFICYLICYYFLPYLLKLH 348
           Y +CY I  YF+P  L ++
Sbjct: 216 YLVCYGIWVYFVPLFLIIY 234


>AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 154

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +1

Query: 292 YFICYLICYYFLPYLLKLH 348
           Y +CY I  YF+P  L ++
Sbjct: 92  YLVCYGIWVYFVPLFLIIY 110


>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -2

Query: 422 LCARLLLLPVTLSF 381
           L A L++LPV +SF
Sbjct: 99  LVANLIILPVAISF 112


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -2

Query: 422 LCARLLLLPVTLSF 381
           L A L++LPV +SF
Sbjct: 99  LVANLIILPVAISF 112


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -2

Query: 422 LCARLLLLPVTLSF 381
           L A L++LPV +SF
Sbjct: 99  LVANLIILPVAISF 112


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 169,621
Number of Sequences: 438
Number of extensions: 3802
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16993167
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)