Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5534
         (349 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC11D3.06 |||MatE family transporter|Schizosaccharomyces pombe...    29   0.21 
SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces pom...    29   0.27 
SPBC4F6.15c |swi10|rad23|DNA repair endonuclease|Schizosaccharom...    25   3.4  
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ...    25   4.4  
SPCC4G3.05c |mus81||Holliday junction resolvase subunit Mus81|Sc...    24   5.9  
SPAC3H8.06 |aur1||inositol phosphorylceramide synthase |Schizosa...    24   5.9  
SPAC3A12.05c |taf2||TATA-binding protein associated factor Taf2|...    24   5.9  
SPBP26C9.03c |||iron ion transporter |Schizosaccharomyces pombe|...    24   7.8  

>SPAC11D3.06 |||MatE family transporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 455

 Score = 29.1 bits (62), Expect = 0.21
 Identities = 15/32 (46%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
 Frame = +1

Query: 55  STTILIKHGSTTRFDVC-QNTWGAGPKRRCSV 147
           ST  LI  G TT FD    N WGAG K+   +
Sbjct: 56  STGWLIALGGTTAFDTLGSNLWGAGKKQELGI 87


>SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 963

 Score = 28.7 bits (61), Expect = 0.27
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = -2

Query: 192 GTTPVPPSTGCVFNSDTTSA 133
           G + +PPSTG  FN++T S+
Sbjct: 594 GASLIPPSTGAAFNNETASS 613


>SPBC4F6.15c |swi10|rad23|DNA repair
           endonuclease|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 252

 Score = 25.0 bits (52), Expect = 3.4
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +3

Query: 201 VRYHMHHPEYLYHNI 245
           ++YH  HPEY+Y  I
Sbjct: 85  LKYHHLHPEYIYSRI 99


>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
           Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1955

 Score = 24.6 bits (51), Expect = 4.4
 Identities = 13/43 (30%), Positives = 19/43 (44%)
 Frame = -1

Query: 328 LPLGRWFKA*YNYVRRPGMLSHVISNIMILWYRYSGWCMWYLT 200
           LP  +W +A Y          H+I+N   +W  + G   WY T
Sbjct: 490 LPEVQWNRAFYKTYYESRSWFHLITNFNRIWVIHFG-MFWYFT 531


>SPCC4G3.05c |mus81||Holliday junction resolvase subunit
           Mus81|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 608

 Score = 24.2 bits (50), Expect = 5.9
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = +1

Query: 34  YHLQYHSSTTILIKHGSTTRFDV 102
           YH+ YH+ +++L K  + T  D+
Sbjct: 512 YHISYHAFSSVLSKSSTLTVGDI 534


>SPAC3H8.06 |aur1||inositol phosphorylceramide synthase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 422

 Score = 24.2 bits (50), Expect = 5.9
 Identities = 11/31 (35%), Positives = 15/31 (48%), Gaps = 3/31 (9%)
 Frame = -1

Query: 271 LSHVISNIMILWYRYSGWCMW---YLTQNWY 188
           LSHV       +Y Y  W  W   YLT +++
Sbjct: 266 LSHVFPRYRFCFYGYVLWLCWCTMYLTHHYF 296


>SPAC3A12.05c |taf2||TATA-binding protein associated factor
            Taf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1174

 Score = 24.2 bits (50), Expect = 5.9
 Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
 Frame = -3

Query: 155  LIQTLHLRFGPAPQV-F*QTSNLVVEPCL 72
            L QT HL FGP   + + Q  N V+  C+
Sbjct: 936  LAQTFHLEFGPKELLPYTQEGNYVLVRCI 964


>SPBP26C9.03c |||iron ion transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 584

 Score = 23.8 bits (49), Expect = 7.8
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = -3

Query: 137 LRFGPAPQVF*QTSNLVVEPCLIRMVVE 54
           LRF    Q+F  T  +++E  L+ +++E
Sbjct: 519 LRFNETAQLFCNTPTMIIEGALLIVLIE 546


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,600,132
Number of Sequences: 5004
Number of extensions: 32148
Number of successful extensions: 66
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 66
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 104153322
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)