Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-5534
(349 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_06_0060 - 25266735-25267210,25267323-25267569,25267650-252683... 30 0.57
06_01_0591 + 4261483-4261631,4261837-4262007,4262127-4262226,426... 29 1.0
07_03_1194 - 24708281-24708796,24708990-24708996,24709199-24709866 29 1.3
10_06_0158 - 11320173-11320279,11320347-11321038,11321283-113215... 28 1.8
02_01_0285 - 1913425-1914065,1914094-1914177,1914249-1915140,191... 28 1.8
01_01_0050 - 382451-382864,382950-383020,383131-383176,383302-38... 28 1.8
06_01_0265 - 1961511-1962497 27 3.1
08_01_0383 - 3405986-3407359,3409283-3410827 27 4.0
07_03_0446 - 18285132-18285221,18285437-18285499,18285805-182858... 27 5.3
03_02_0197 + 6337212-6337278,6339261-6340517,6340599-6340626,634... 27 5.3
02_02_0540 - 11334744-11334832,11335445-11335494,11335574-11336805 27 5.3
12_02_1155 + 26541137-26541142,26541244-26542623,26542730-265428... 26 7.1
12_01_0490 + 3878436-3878466,3878559-3879113,3879218-3879777,388... 26 7.1
08_02_0611 + 19317969-19318778 26 7.1
03_05_0257 + 22439915-22440275,22440280-22440627,22440962-224410... 26 7.1
01_03_0020 - 11698429-11699126,11699557-11700532 26 7.1
10_08_1037 - 22477358-22478752 26 9.3
09_02_0608 + 11194889-11195134,11195185-11195406 26 9.3
>05_06_0060 -
25266735-25267210,25267323-25267569,25267650-25268345,
25268457-25268709,25268786-25269261,25270760-25270909
Length = 765
Score = 29.9 bits (64), Expect = 0.57
Identities = 12/39 (30%), Positives = 17/39 (43%)
Frame = -2
Query: 228 IPGGACGTSLKIGTTPVPPSTGCVFNSDTTSAFWACTPG 112
+PGGA G + I + P+PP + W PG
Sbjct: 138 LPGGAAGPRVAIFSAPLPPPDSSPARQELAVRSWLALPG 176
>06_01_0591 +
4261483-4261631,4261837-4262007,4262127-4262226,
4263151-4263315,4263416-4263544,4263758-4263858,
4264527-4264596,4265080-4265331,4265828-4265897,
4266281-4266341,4266916-4267003,4267746-4267830,
4268168-4268234,4268442-4268559,4268843-4268923,
4269022-4269267,4269670-4269771,4269847-4269914,
4270040-4270171,4270283-4270430,4270504-4270790,
4270920-4271067,4271156-4271331,4271407-4271518,
4271614-4271667,4273134-4273244,4273317-4273478,
4273627-4273814,4273948-4274137,4274297-4274464,
4274832-4274912
Length = 1359
Score = 29.1 bits (62), Expect = 1.0
Identities = 15/47 (31%), Positives = 26/47 (55%)
Frame = -1
Query: 259 ISNIMILWYRYSGWCMWYLTQNWYNTSSTKYRLCI*FRHYICVLGLH 119
+S I ILW+R ++ ++ + +S RLC+ R +C LGL+
Sbjct: 60 VSPIYILWFRSRNLVVFVVSAMAVDRASASARLCL--RGLLCCLGLN 104
>07_03_1194 - 24708281-24708796,24708990-24708996,24709199-24709866
Length = 396
Score = 28.7 bits (61), Expect = 1.3
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +2
Query: 143 VSELNTQPVLGGTGVVPILSEVPHAPPGI 229
V + N V+GG G +P + +VP APP +
Sbjct: 145 VDDPNLPAVMGGGGGIPGIPQVPVAPPEV 173
>10_06_0158 -
11320173-11320279,11320347-11321038,11321283-11321509,
11321521-11321611,11321839-11322125,11322428-11322523
Length = 499
Score = 28.3 bits (60), Expect = 1.8
Identities = 17/45 (37%), Positives = 22/45 (48%)
Frame = +1
Query: 10 TRWPYTVQYHLQYHSSTTILIKHGSTTRFDVCQNTWGAGPKRRCS 144
TRW +V+ Q H T + H +TT V + TW G RR S
Sbjct: 31 TRWYQSVR---QIHGRGTREVLHAATTTRGVQRRTWTQGGARRRS 72
>02_01_0285 -
1913425-1914065,1914094-1914177,1914249-1915140,
1915205-1915249,1915335-1915870,1915987-1916041
Length = 750
Score = 28.3 bits (60), Expect = 1.8
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +2
Query: 128 QNADVVSELNTQPVLGGTGVVPILSEVPHAPPGIP 232
QN DV +++NTQP+ G+ V P + GIP
Sbjct: 519 QNPDVYAQINTQPLKVGSPVCPTTMKRICRQHGIP 553
>01_01_0050 -
382451-382864,382950-383020,383131-383176,383302-383333,
383409-383558,383666-383849,383934-384109,384580-384628,
384724-384923,385515-385548
Length = 451
Score = 28.3 bits (60), Expect = 1.8
Identities = 13/33 (39%), Positives = 15/33 (45%)
Frame = +2
Query: 221 PGIPIPQYHNIGDYMGQHAWPTNIIVLSLKPAP 319
PG P+ YH Y H TN I + PAP
Sbjct: 336 PGSPLTNYHGAPPYQQYHHGSTNAIDEAPAPAP 368
>06_01_0265 - 1961511-1962497
Length = 328
Score = 27.5 bits (58), Expect = 3.1
Identities = 7/12 (58%), Positives = 11/12 (91%)
Frame = +3
Query: 36 SPPISQFHHHPY 71
+PP++ FHHHP+
Sbjct: 22 APPVAAFHHHPF 33
>08_01_0383 - 3405986-3407359,3409283-3410827
Length = 972
Score = 27.1 bits (57), Expect = 4.0
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = -1
Query: 343 LEDNLLPLGRWFKA*YNYVRRPGMLSHVISNIMIL 239
L D +L ++FKA +YVRRP + +I I +L
Sbjct: 357 LTDRVLHKKKYFKAKSDYVRRPMRIGELIRAIDLL 391
>07_03_0446 -
18285132-18285221,18285437-18285499,18285805-18285867,
18286079-18286129,18286413-18286506,18286696-18286856,
18287089-18287145,18287380-18287493,18287934-18287999,
18288063-18288266,18289207-18289284,18289669-18289788,
18290425-18290491,18290635-18290735,18290820-18290936,
18292024-18292107,18292181-18292309,18292385-18292510,
18292622-18292696,18292814-18292947,18293032-18293137,
18293220-18293276,18294387-18294573,18295244-18295407,
18296129-18296353,18296538-18296744,18297043-18297375,
18297604-18297993
Length = 1220
Score = 26.6 bits (56), Expect = 5.3
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +1
Query: 28 VQYHLQYHSSTTILIKHGSTTRFDVCQNTWGA 123
+ YH +SS T+L K +D C+NTW A
Sbjct: 538 LDYHDFINSSITLLTKFPEV--YDECRNTWQA 567
>03_02_0197 +
6337212-6337278,6339261-6340517,6340599-6340626,
6340735-6340897
Length = 504
Score = 26.6 bits (56), Expect = 5.3
Identities = 20/60 (33%), Positives = 23/60 (38%)
Frame = -2
Query: 327 YL*GAGLRLSTIMFVGQACCPM*SPIL*YCGIGIPGGACGTSLKIGTTPVPPSTGCVFNS 148
Y G G+ T F G A P C GG GTSL GT+ P S +S
Sbjct: 417 YYHGMGMGSGTCYFSGVAVITTTDPSHGSCVYAGSGGKNGTSLLNGTSLAPSSNSTAGDS 476
>02_02_0540 - 11334744-11334832,11335445-11335494,11335574-11336805
Length = 456
Score = 26.6 bits (56), Expect = 5.3
Identities = 11/26 (42%), Positives = 17/26 (65%), Gaps = 2/26 (7%)
Frame = +3
Query: 12 EVAIHSPISPP--ISQFHHHPYQTWL 83
++A+HSP+ PP IS + P + WL
Sbjct: 151 KLAVHSPLLPPADISVYPQTPLKVWL 176
>12_02_1155 +
26541137-26541142,26541244-26542623,26542730-26542852,
26542996-26543168,26543332-26543572,26543931-26544023,
26544092-26544232,26544358-26544450,26544633-26544837,
26544993-26545078,26545532-26545620,26545736-26545820,
26545898-26545954,26546319-26546399,26547130-26547321
Length = 1014
Score = 26.2 bits (55), Expect = 7.1
Identities = 8/24 (33%), Positives = 15/24 (62%)
Frame = +3
Query: 207 YHMHHPEYLYHNIIILEITWDNMP 278
++ HP+ ++ NI+ EI W +P
Sbjct: 841 FNAEHPQIIFDNIMNREIPWPQVP 864
>12_01_0490 +
3878436-3878466,3878559-3879113,3879218-3879777,
3880660-3880965,3881071-3881202,3881623-3881756,
3881939-3882015,3882084-3882226,3883376-3883633,
3884085-3884111
Length = 740
Score = 26.2 bits (55), Expect = 7.1
Identities = 15/39 (38%), Positives = 19/39 (48%)
Frame = +2
Query: 116 GVQAQNADVVSELNTQPVLGGTGVVPILSEVPHAPPGIP 232
G+QAQ ++S L G T LS+ PPGIP
Sbjct: 677 GLQAQRIRMMSGLRLASPRGNTMASNPLSQANIRPPGIP 715
>08_02_0611 + 19317969-19318778
Length = 269
Score = 26.2 bits (55), Expect = 7.1
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = +1
Query: 61 TILIKHGSTTRFDVCQNTWGAGPKRRCS 144
T+ G+ R D CQ G GP+ RC+
Sbjct: 22 TLAATAGAPFRCDGCQEPGGDGPRYRCA 49
>03_05_0257 +
22439915-22440275,22440280-22440627,22440962-22441015,
22441390-22441763
Length = 378
Score = 26.2 bits (55), Expect = 7.1
Identities = 13/41 (31%), Positives = 18/41 (43%), Gaps = 3/41 (7%)
Frame = +2
Query: 206 VPHAPPGIPIPQYHNIGDYMGQHAWPTNIIVLSLK---PAP 319
VPH P +P+P+ + WP I +K PAP
Sbjct: 14 VPHEAPPLPLPRLRREDGQEKRRRWPFRSIARGVKLIVPAP 54
>01_03_0020 - 11698429-11699126,11699557-11700532
Length = 557
Score = 26.2 bits (55), Expect = 7.1
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = -2
Query: 219 GACGTSLKIGTTPVPPSTGCVFNSDTT 139
G +L TPVPPST C +D T
Sbjct: 22 GRSDATLPPPATPVPPSTACNGTTDPT 48
>10_08_1037 - 22477358-22478752
Length = 464
Score = 25.8 bits (54), Expect = 9.3
Identities = 12/27 (44%), Positives = 14/27 (51%), Gaps = 4/27 (14%)
Frame = +3
Query: 6 RHEVAIHS----PISPPISQFHHHPYQ 74
RH A H P SPP Q HHP++
Sbjct: 227 RHSPAAHRGDPLPASPPQPQHQHHPHR 253
>09_02_0608 + 11194889-11195134,11195185-11195406
Length = 155
Score = 25.8 bits (54), Expect = 9.3
Identities = 13/27 (48%), Positives = 14/27 (51%)
Frame = +2
Query: 161 QPVLGGTGVVPILSEVPHAPPGIPIPQ 241
Q V GGT V V AP G P+PQ
Sbjct: 65 QQVNGGTAVPMASLPVNQAPTGAPLPQ 91
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,292,034
Number of Sequences: 37544
Number of extensions: 235966
Number of successful extensions: 669
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 646
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 668
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 506210712
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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