Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-5533
(573 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC16A3.13 |meu7|aah4|alpha-amylase homolog Aah4|Schizosaccharo... 33 0.039
SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam... 32 0.069
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 29 0.48
SPCC18B5.03 |wee1||dual specificity protein kinase Wee1|Schizosa... 29 0.48
SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1 |Schizosacch... 29 0.64
SPBC1105.14 |rsv2||transcription factor Rsv2|Schizosaccharomyces... 27 1.5
SPBC800.09 |sum2||G2/M transition checkpoint protein Sum2|Schizo... 27 1.5
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po... 27 2.0
SPCC4G3.09c |gyp3||GTPase activating protein Gyp3|Schizosaccharo... 27 2.0
SPBP23A10.05 |ssr4||SWI/SNF and RSC complex subunit Ssr4|Schizos... 27 2.6
SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces po... 27 2.6
SPBC3D6.02 |but2||But2 family protein But2 |Schizosaccharomyces ... 27 2.6
SPAC13C5.07 |rad32|mre11|Rad32 nuclease|Schizosaccharomyces pomb... 27 2.6
SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa... 26 3.4
SPCC5E4.05c |||serine hydrolase |Schizosaccharomyces pombe|chr 3... 26 3.4
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 26 4.5
SPAC23E2.03c |ste7||meiotic suppressor protein Ste7|Schizosaccha... 25 6.0
SPAC6B12.13 |||protein phosphatase inhibitor |Schizosaccharomyce... 25 6.0
SPBC2F12.03c |||EST1 family protein|Schizosaccharomyces pombe|ch... 25 6.0
SPBC16A3.14 |||mitochondrial ribosomal protein subunit S26|Schiz... 25 7.9
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 25 7.9
SPAC23A1.06c |cmk2|mkp2|MAPK-activated protein kinase Cmk2|Schiz... 25 7.9
SPAC688.06c |slx4||structure-specific endonuclease subunit |Schi... 25 7.9
SPBC21B10.07 |||glycosyl hydrolase family 16|Schizosaccharomyces... 25 7.9
SPBC4F6.10 |vps901|vps9a|guanyl-nucleotide exchange factor Vps90... 25 7.9
>SPBC16A3.13 |meu7|aah4|alpha-amylase homolog
Aah4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 774
Score = 32.7 bits (71), Expect = 0.039
Identities = 22/95 (23%), Positives = 33/95 (34%), Gaps = 3/95 (3%)
Frame = +2
Query: 230 PIVHAAPVEHSSYIHASP---VVQHFSPVQHAPVVHHAAIPIAVEHSDHVEDHAPAKYEF 400
P H H ++ P P +H HH P V H+ DH P K+E
Sbjct: 363 PWKHEEHCHHGKFLRPVPHNVTKPDHKPWKHEEHCHHGKFPRPVPHNGTKPDHKPWKHEE 422
Query: 401 SYSVEDPHTGDHKCQHETRDGDVVKGEYSVLQPDG 505
S + H+ + + D ++ Q DG
Sbjct: 423 HCSCHEDHSVHERPSAKGALEDYIQTFVETFQIDG 457
Score = 28.3 bits (60), Expect = 0.84
Identities = 12/32 (37%), Positives = 15/32 (46%)
Frame = +2
Query: 302 PVQHAPVVHHAAIPIAVEHSDHVEDHAPAKYE 397
P +H HH P V H+ DH P K+E
Sbjct: 195 PWKHEEHCHHGKFPRPVPHNGTKPDHKPWKHE 226
Score = 28.3 bits (60), Expect = 0.84
Identities = 12/32 (37%), Positives = 15/32 (46%)
Frame = +2
Query: 302 PVQHAPVVHHAAIPIAVEHSDHVEDHAPAKYE 397
P +H HH P V H+ DH P K+E
Sbjct: 307 PWKHEEHCHHGRFPRPVPHNGTKPDHKPWKHE 338
Score = 27.9 bits (59), Expect = 1.1
Identities = 11/32 (34%), Positives = 15/32 (46%)
Frame = +2
Query: 302 PVQHAPVVHHAAIPIAVEHSDHVEDHAPAKYE 397
P +H HH P + H+ DH P K+E
Sbjct: 280 PWKHEEHCHHGKFPRPIPHNGTKPDHKPWKHE 311
>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
Mam3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1082
Score = 31.9 bits (69), Expect = 0.069
Identities = 24/84 (28%), Positives = 46/84 (54%), Gaps = 2/84 (2%)
Frame = +3
Query: 288 SNTSALCNMLQSCTTLRFQLPSNTPIMSKIMLPRSMSSHIPSRIPTPAITSANTK-PVMV 464
S++ +L N S +T +P++ S + L S S I S I + ++T+ +T P +
Sbjct: 525 SSSLSLTNAKSSLSTPSTTIPTSN---SSVSLQTSSSLIISSPIISSSLTATSTSTPALT 581
Query: 465 MS*K-ANTLYSSLMVPSARFEYTA 533
S +NT Y+S ++PS+ +Y++
Sbjct: 582 HSITPSNTSYTSSLIPSSSTDYSS 605
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 29.1 bits (62), Expect = 0.48
Identities = 22/70 (31%), Positives = 31/70 (44%)
Frame = +1
Query: 136 AFSSSNGTLYPSIESCCSSTDSRSPFDSTCRSYCSRRPRGTFFVYTCFASSPTLQPCATC 315
+ SSS + PS+ S SST S + ST SY S + +SS TL +
Sbjct: 177 SLSSSTSSSQPSVSSTSSSTFSSAAPTSTSSSYLSSSSVVSSSSSPSSSSSSTLTSSSLS 236
Query: 316 SSRAPRCDSN 345
+S P S+
Sbjct: 237 TSSIPSTSSS 246
>SPCC18B5.03 |wee1||dual specificity protein kinase
Wee1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 877
Score = 29.1 bits (62), Expect = 0.48
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = +2
Query: 137 PSHQATAHYTPVLSHAAPVLTHAAPLIQHAGPIVHAAPV 253
P Q T+ +P SHAAP+ + P H+ P + A PV
Sbjct: 63 PRKQTTS--SPSFSHAAPLHPLSPPSFTHSQPQIQAQPV 99
>SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 297
Score = 28.7 bits (61), Expect = 0.64
Identities = 18/60 (30%), Positives = 25/60 (41%)
Frame = +1
Query: 166 PSIESCCSSTDSRSPFDSTCRSYCSRRPRGTFFVYTCFASSPTLQPCATCSSRAPRCDSN 345
PS + C S + +S S S CS+ +G S + C C+S P C SN
Sbjct: 233 PSEKPSCCSQEKKSCCSSKKPSCCSQEKKGCCSTEKTSCCSQEKKSC--CTSEKPSCCSN 290
>SPBC1105.14 |rsv2||transcription factor Rsv2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 637
Score = 27.5 bits (58), Expect = 1.5
Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
Frame = +3
Query: 345 LPSNTPIMSKIML--PRSMSSHIPSRIPTPAITSAN 446
+PSNT I S L P S++IP+ +PT + S+N
Sbjct: 455 VPSNTTISSSPPLTSPVKTSANIPNLLPTSELDSSN 490
>SPBC800.09 |sum2||G2/M transition checkpoint protein
Sum2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 426
Score = 27.5 bits (58), Expect = 1.5
Identities = 21/87 (24%), Positives = 38/87 (43%), Gaps = 2/87 (2%)
Frame = +2
Query: 137 PSHQATAHYTPVLSHAAPVLTHAAPLIQHAGPIVHAAPVEHSSYIHASPVVQHFSPVQHA 316
PS+Q ++ P + P A+P +Q P P S I AS + + + ++++
Sbjct: 206 PSNQKPPNFAPGMPAPGPTAVSASPSLQSMPPTNGVIPGAQPS-IEAS-IEKESTSIRNS 263
Query: 317 PVVHHAAI--PIAVEHSDHVEDHAPAK 391
V + + + V S VE P+K
Sbjct: 264 TVTNDRVVNTTVDVSQSQTVETSGPSK 290
>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 2812
Score = 27.1 bits (57), Expect = 2.0
Identities = 9/20 (45%), Positives = 15/20 (75%)
Frame = -3
Query: 325 HDWSMLHRAEVLDYWRSMYI 266
+D+S + E +DYW+S+YI
Sbjct: 549 NDYSPMLSYEAIDYWKSLYI 568
>SPCC4G3.09c |gyp3||GTPase activating protein
Gyp3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 635
Score = 27.1 bits (57), Expect = 2.0
Identities = 13/36 (36%), Positives = 23/36 (63%), Gaps = 2/36 (5%)
Frame = -1
Query: 492 STEYSPFTTS--PSRVSCWHL*SPVWGSSTEYENSY 391
+++Y+ T S P+ SC +L +PV S+ EYE+ +
Sbjct: 103 NSDYASITPSNHPAFTSCAYLQNPVVDSNNEYESKF 138
>SPBP23A10.05 |ssr4||SWI/SNF and RSC complex subunit
Ssr4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 395
Score = 26.6 bits (56), Expect = 2.6
Identities = 11/38 (28%), Positives = 20/38 (52%)
Frame = +3
Query: 345 LPSNTPIMSKIMLPRSMSSHIPSRIPTPAITSANTKPV 458
+P T + + LP S+ + S+ TP+ ++ T PV
Sbjct: 185 IPEGTALSQRETLPNMGSAQMKSQSRTPSFSNVTTSPV 222
>SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1010
Score = 26.6 bits (56), Expect = 2.6
Identities = 18/54 (33%), Positives = 25/54 (46%)
Frame = +2
Query: 260 SSYIHASPVVQHFSPVQHAPVVHHAAIPIAVEHSDHVEDHAPAKYEFSYSVEDP 421
S Y+H VV+ Q P+ H P + SDH + A K F SV++P
Sbjct: 414 SRYLHFWLVVEGLKESQDDPLNAHMIAPFSDIVSDHTDFTAIVKSYFE-SVDNP 466
>SPBC3D6.02 |but2||But2 family protein But2 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 390
Score = 26.6 bits (56), Expect = 2.6
Identities = 13/43 (30%), Positives = 22/43 (51%)
Frame = +3
Query: 288 SNTSALCNMLQSCTTLRFQLPSNTPIMSKIMLPRSMSSHIPSR 416
S S C + S + NT +S + LPR++S+ IP++
Sbjct: 181 SGRSIDCQWMDSVALNLSRYYGNTEALSSLPLPRNLSADIPAK 223
>SPAC13C5.07 |rad32|mre11|Rad32 nuclease|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 649
Score = 26.6 bits (56), Expect = 2.6
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +2
Query: 155 AHYTPVLSHAAPVLTHAAPL 214
A +TPVL H + +L H +PL
Sbjct: 538 AEHTPVLKHTSSLLDHHSPL 557
>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1628
Score = 26.2 bits (55), Expect = 3.4
Identities = 21/81 (25%), Positives = 34/81 (41%)
Frame = -2
Query: 419 DPRRNMRTHTSREHDLRHDRSVRRQLESQRGARLEHVAQG*SVGLLAKHVYTKNVPRGRR 240
D R++ HT RE + + RR+ ESQ+ R ++ + T NV R R
Sbjct: 1440 DNLRSVSRHTRREPQQAQNLNARREHESQKSDRWRQNGNVNRNPRVSNNNST-NVSRERS 1498
Query: 239 EQ*DRHVESKGLRESVLEQHD 177
+ + + R+ V E D
Sbjct: 1499 SEANHRTSNDNKRDEVTEGKD 1519
>SPCC5E4.05c |||serine hydrolase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 378
Score = 26.2 bits (55), Expect = 3.4
Identities = 19/79 (24%), Positives = 27/79 (34%), Gaps = 4/79 (5%)
Frame = +2
Query: 119 IVRHDEPSHQATAHYTPVLSHAAPVLTHAAPLIQHAG-PI---VHAAPVEHSSYIHASPV 286
I H +PS + + H P T +AP G P+ H A + A P
Sbjct: 270 IYEHSKPSETVKSEQETAVEHPKPTATTSAPSASPTGVPVEEESHKATSDAVPPAEAKPE 329
Query: 287 VQHFSPVQHAPVVHHAAIP 343
S + AP +P
Sbjct: 330 PVPASAAERAPTSESTTVP 348
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 25.8 bits (54), Expect = 4.5
Identities = 16/39 (41%), Positives = 21/39 (53%)
Frame = -3
Query: 496 LEYRVFAFHDITITGFVLALVIAGVGILDGI*ELILRGS 380
LE + F +ITI G L L + LD I +LILR +
Sbjct: 1896 LEVHLLDFPNITIKGSELQLPFQAIIKLDKINDLILRAT 1934
>SPAC23E2.03c |ste7||meiotic suppressor protein
Ste7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 569
Score = 25.4 bits (53), Expect = 6.0
Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 3/68 (4%)
Frame = +3
Query: 339 FQLP---SNTPIMSKIMLPRSMSSHIPSRIPTPAITSANTKPVMVMS*KANTLYSSLMVP 509
FQLP S TP S P S +S+ P+ I T + T + S N++++ +MVP
Sbjct: 170 FQLPEFDSVTPSASLYKQP-SFNSN-PAPITTSSATHTSQFSTSSSS-SVNSVHTPVMVP 226
Query: 510 SARFEYTA 533
+ F+Y +
Sbjct: 227 NPYFQYNS 234
>SPAC6B12.13 |||protein phosphatase inhibitor |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 104
Score = 25.4 bits (53), Expect = 6.0
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = +1
Query: 187 SSTDSRSPFDSTCRSYCSR 243
S +DS S DS+C S CSR
Sbjct: 80 SDSDSDSDSDSSCSSCCSR 98
>SPBC2F12.03c |||EST1 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 891
Score = 25.4 bits (53), Expect = 6.0
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = -2
Query: 125 ERCFGKTQHGRGPRL*H 75
+RCFGKT G P L H
Sbjct: 415 KRCFGKTNDGSNPCLYH 431
>SPBC16A3.14 |||mitochondrial ribosomal protein subunit
S26|Schizosaccharomyces pombe|chr 2|||Manual
Length = 277
Score = 25.0 bits (52), Expect = 7.9
Identities = 7/21 (33%), Positives = 13/21 (61%)
Frame = -3
Query: 343 WNRSVVHDWSMLHRAEVLDYW 281
WN + D+ +L+R+ +D W
Sbjct: 230 WNHAYYKDYGLLNRSRYIDTW 250
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 25.0 bits (52), Expect = 7.9
Identities = 17/47 (36%), Positives = 20/47 (42%)
Frame = +1
Query: 112 PKHRSP*RAFSSSNGTLYPSIESCCSSTDSRSPFDSTCRSYCSRRPR 252
P+H + S G+ PS S S SRSP S R SR R
Sbjct: 113 PRHHRRSYSPRSDYGSRSPSPHSSVDSHQSRSPVRSRDRDRSSRSSR 159
>SPAC23A1.06c |cmk2|mkp2|MAPK-activated protein kinase
Cmk2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 504
Score = 25.0 bits (52), Expect = 7.9
Identities = 16/35 (45%), Positives = 20/35 (57%)
Frame = +3
Query: 357 TPIMSKIMLPRSMSSHIPSRIPTPAITSANTKPVM 461
TP K+ LPRS+ S IPT I SA T P++
Sbjct: 370 TPGGPKLSLPRSLVSKGEIDIPTTPIKSA-THPLL 403
>SPAC688.06c |slx4||structure-specific endonuclease subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 419
Score = 25.0 bits (52), Expect = 7.9
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = +1
Query: 142 SSSNGTLYPSIESCCSSTDSRS 207
S S TL +ESC + DSRS
Sbjct: 304 SDSKATLIKIVESCLDAIDSRS 325
>SPBC21B10.07 |||glycosyl hydrolase family 16|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 419
Score = 25.0 bits (52), Expect = 7.9
Identities = 15/46 (32%), Positives = 26/46 (56%)
Frame = +2
Query: 23 MFFKIAVVCSILAICQGGVIDEGHGHAVSSQSIVRHDEPSHQATAH 160
+ F +A++CS+L GGV+ GH ++ VR PS++A +
Sbjct: 92 LIFIVALICSVLIGVLGGVL--GH------RTAVRDRHPSYKAKTY 129
>SPBC4F6.10 |vps901|vps9a|guanyl-nucleotide exchange factor Vps901
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 537
Score = 25.0 bits (52), Expect = 7.9
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = +2
Query: 314 APVVHHAAIPIAVEHSDHVED 376
+P + + IP++ EHSD VE+
Sbjct: 201 SPEIAKSGIPLSSEHSDDVEE 221
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,696,065
Number of Sequences: 5004
Number of extensions: 61927
Number of successful extensions: 271
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 254
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 270
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 244081442
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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